Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq684 104 2e-17 seq6499 91.5 1e-13 >seq684 Length=498857 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||||||||| || | | || || |||||||| || ||||| || || || Sbjct 348952 CGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCA 348893 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||||||||| | | ||||||| | ||| || || ||||| ||||||||||| Sbjct 348892 TCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTA 348833 Query 138520 TCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||||| ||| | | ||| | || || | | ||| || || | || | Sbjct 348832 TCC-TGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGAT 348774 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || |||||||| |||||||||||||| Sbjct 348773 GGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| ||||||||| | ||||||| ||||||||||| ||||| | ||||| Sbjct 350320 CGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAGAGCGTACGGCCA 350261 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || ||||| | | |||| | | ||| || || || || || ||||||||| Sbjct 350260 TCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTG 350201 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | ||||| | ||| | |||||| | | ||| || || | || | Sbjct 350200 TC-TTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACTTCCAAGGTGAT 350142 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| ||||| || ||||| |||||||| Sbjct 350141 GGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || | ||| | | ||||||||||| ||||||||||| Sbjct 349648 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 349589 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| || |||||||| | | ||||||| | ||| || || || || Sbjct 349588 AGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGA 349529 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||| | || | | ||| | || || | | ||| || Sbjct 349528 ATTCCTTCTTTATC-CTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAAC 349470 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || |||||||| ||||| |||||||| Sbjct 349469 CTCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 >seq6499 Length=11414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | |||||||||||||||| |||||||| | ||||| || || || || Sbjct 240 ATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGAGAGTGTACGTCCATCTTCAAGCTG 299 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 ||||| | |||| | | ||| || || ||||| |||||||| || || || || Sbjct 300 CTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGTATCTT 359 Query 138531 TTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 ||||| | ||| | ||||| | || |||||| || | || | || |||||||| Sbjct 360 AGCTTTTACATTTTCGATTGTGTCAGACGGCTCCACTTCCAGGGTTATGGTCTTACCAGT 419 Query 138591 CAGAGTTTTTACAAAAATCTGCATGGCT 138618 || ||||| ||||| || |||||| || Sbjct 420 GAGTGTTTTAACAAAGATTTGCATGCCT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496155567111840