Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq684 118 1e-21 seq6499 98.7 9e-16 seq1688 93.3 4e-14 seq295 82.4 7e-11 >seq684 Length=498857 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | ||| |||| || || || ||||| ||||| |||||||| || Sbjct 348967 ATTCCACCACGAAGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCA 348908 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || |||||||| ||||| | || | | ||||| || || Sbjct 348907 GACAAGGTTCGGCCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGA 348848 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||| ||||||||| ||| | ||| | || || || | ||| Sbjct 348847 GGAATACCTTCTTTATCCTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCA 348788 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || || ||||||||||| |||||||| ||||| Sbjct 348787 ACTTCCAAGGTGATGGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | | ||| | || |||||||| || ||||||||||| |||||||| || Sbjct 349423 ATACCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCA 349364 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | || ||||||||||| || || Sbjct 349363 GATAATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGG 349304 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || ||||| ||||| || | ||| | ||||| || | || Sbjct 349303 GGAATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCC 349244 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || ||||| || ||||| || |||||||||||||| Sbjct 349243 ACCTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAAATTTGCAT 349194 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || |||||||| || || || || || ||| | ||| || Sbjct 349630 ACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCA 349571 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| ||||| | || | | ||||| || || ||||| ||||||||||| ||| Sbjct 349570 AGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGAATTCCTTCTTTATCCTGA 349511 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | || || || | ||| || || | |||| || ||| Sbjct 349510 ATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAACCTCCAAGGTAATGGTCTTG 349451 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||||||| ||||| || ||||| Sbjct 349450 CCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || || || || || ||||||||||| || ||| | | | ||| | Sbjct 348718 ACAAGATGGAGAGTAGACTCTTTCTGGATATTATAGTC--TGAAAGAGTACGGCCATCTT 348661 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||||||| || || || | ||||| | || ||||| || || || ||||||||||| | Sbjct 348660 CCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATTCCTTCTTTATCCT 348601 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| || | ||| | || || || | ||| ||||| | || | || | Sbjct 348600 GAATTTTCGCCTTAACATTTTCAATTGTATCAGACGGCTCAACTTCCAAGGTGATGGTCT 348541 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| |||||||| || ||||| Sbjct 348540 TGCCTGTGAGAGTCTTTACAAAGATCTGCAT 348510 >seq6499 Length=11414 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| |||||||| |||||||| || || ||||| || ||| | ||| || Sbjct 463 ACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 522 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | ||||| | ||||| || || ||||| |||||||| ||||| Sbjct 523 AGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGG 582 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | || || || | ||| ||||| || || | || ||| Sbjct 583 ATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTACTTCCAGGGTGATAGTCTTG 642 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| |||||||| Sbjct 643 CCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||||||| || || || || || ||||||||||| || ||| | | || ||| | Sbjct 919 ACTAGATGGAGAGTAGACTCTTTCTGGATATTATAGTC--TGAAAGAGTACGACCATCTT 976 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||||||||| || ||| | ||||||| || || || || || || || || ||||| | Sbjct 977 CCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGAGGGATTCCCTCCTTATCCT 1036 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || || ||| | ||| | ||| || || | || ||||| | ||| | |||| Sbjct 1037 GTATCTTAGCTTTAACATTTTCAATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTT 1096 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || |||||||| ||||| Sbjct 1097 TACCTGTGAGTGTCTTCACAAAAATCTGCAT 1127 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || |||||||| || || || || || ||| | ||| || Sbjct 7 ACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCA 66 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| ||||| | ||||| | ||||| || || || || |||||||| ||||| Sbjct 67 AGCTGTTTACCTGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGG 126 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||||| |||| ||| ||||| | |||| || ||| Sbjct 127 ATCTTGGCCTTCACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAGTCTTG 186 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| || ||||| Sbjct 187 CCAGTAAGTGTTTTTACAAAGATCTGCAT 215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || |||||||| || || || || || ||| | ||| || Sbjct 1147 ACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCA 1206 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| ||||| | ||||| | || || || || || || ||||||||||| ||| Sbjct 1207 AGCTGTTTACCTGCAAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGA 1266 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | || || || | ||| || || | |||| || ||| Sbjct 1267 ATTTTAGCCTTGACATTTTCAATAGTATCTGATGGCTCAACCTCCAAGGTAATGGTCTTG 1326 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||| || ||||| Sbjct 1327 CCTGTGAGAGTCTTAACAAAGATCTGCAT 1355 >seq1688 Length=171348 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 45151 CCTTT-TGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| || |||||||| || | ||| | ||| ||||||||||| || || | Sbjct 124681 CCTTTCTGAATATTATAGTCAGATAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAA 124622 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || || | |||||||| || ||||| ||||| ||||| ||||| || || | | Sbjct 124621 ATTAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTT 124562 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| |||| ||| || || || |||| || || || || || ||||| ||| Sbjct 124561 TCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACA 124502 Query 45330 AAAATTTGCAT 45340 ||||| ||||| Sbjct 124501 AAAATCTGCAT 124491 >seq295 Length=498498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 ||||||||||| || |||||||||| | ||| || || |||||||||||| | | | Sbjct 324257 ATTTTGCAGTATGATATGTGGAATGTGAAACCCACTAACTTGTGGGACTGGTCTGCTCTG 324198 Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220 ||| || |||| | | | ||| | ||||| || ||| | || ||||| || Sbjct 324197 AAAGAAAAAATATTGGCTAATGGTCTAAAAAACTCTCTATTGATTGCTCCAATGCCTACA 324138 Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC 124270 ||| | ||||| ||||| | |||||||| || || ||||| || | ||| Sbjct 324137 GCATCAACTGCCCAAATACTTGGAAACAATGAGTCTTTCGAACCATACAC 324088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451905895011120