Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6499 111 2e-19 seq684 91.5 2e-13 >seq6499 Length=11414 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||||||| | | || ||||| | || ||||||||| ||||||||||| || Sbjct 217 CCTCCTCTTAATCTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGAG 276 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || |||||||| || ||||| ||||| | |||||| || | || Sbjct 277 AGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 336 Query 46487 ACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | ||||| ||| ||||| ||| | | ||| | ||||| || |||| Sbjct 337 ATACCTTCCTTATCCTGTATCTTAGCTTTTACATTTTCG--ATTGTGTCAGACGGCTCCA 394 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || ||||| || || || || |||||||||||||||||||| Sbjct 395 CTTCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 443 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| || || | |||||||| | || ||||||||| || ||||| || | Sbjct 443 TGCCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAG 502 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| | | || || |||||||| || ||||| ||||| | |||||| || | | Sbjct 503 AGAGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTG 562 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| |||||| ||| | || | | || || | || | Sbjct 563 GAATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTA 622 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| || ||||| || || ||||| |||||||||||||| Sbjct 623 CTTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 >seq684 Length=498857 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||||||| | | || ||||||| ||| |||||||| ||||| ||||| ||| Sbjct 349420 CCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCAGAT 349361 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||||||||| || || || || || ||||| || | || Sbjct 349360 AATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGGGA 349301 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||| || ||| | | | | ||||| | |||||| Sbjct 349300 ATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCCACC 349241 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || || ||||| || || || |||||||| ||||||||| Sbjct 349240 TCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAAATTTGCATT 349193 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| || ||||||||||| ||||| || | || || | || || Sbjct 348490 ACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGACAACGTTCGGCCATCTTCA 348431 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || ||||| | || ||||| | || | | || |||||| | Sbjct 348430 AGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCCTGG 348371 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | || || | ||||| |||| |||||||| ||| Sbjct 348370 ATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCCACTTCCAAGGTGATGGTCTTG 348311 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | ||||| |||||||| |||||||| Sbjct 348310 CCAGTTAATGTTTTCACAAAGATCTGCATTTT 348279 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | || ||||| | ||| ||||||||| || |||||||| || Sbjct 349648 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 349589 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || ||||| || || || || || | | |||||| || | || Sbjct 349588 AGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGA 349529 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || ||| || || ||||| | | | ||| || | || || Sbjct 349528 ATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAACC 349469 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| ||||| || || |||||||||||||| ||||| Sbjct 349468 TCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565116718303440