Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq684 107 2e-18 seq6499 98.7 1e-15 seq4446 96.9 3e-15 >seq684 Length=498857 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| ||||| ||||| ||| | || || ||| | | Sbjct 349422 ATGCAGATCTTTGTTAAAACTCTCACAGGCAAGACCATTACCTTGGAGGTTGAGCCATCA 349481 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||| | | || | ||||| | || ||||| |||||||| | || || Sbjct 349482 GATACGATTGAAAATG-TCAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCAGATCA 349540 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || |||||||| || || | | || ||| |||||||| Sbjct 349541 GCAGAGGCTAATCTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAA 349600 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| | || || ||| | || || ||||||||||| || Sbjct 349601 CATACAAAAGGAGTCCACACTCCATCTTGTACTTCGTTTGAGAGGAGG 349648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || |||||||||||||| | || || || || | Sbjct 349650 ATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTAGAAGTGGAACCCTCT 349709 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||||| ||||| | || || || ||||||||| | |||||| Sbjct 349710 GATACCATCGAGAATGTTAAAGCTAAAATACAAGATAAGGAAGGAATTCCCCCAGACCAA 349769 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || || |||| || | || || || |||||||| Sbjct 349770 CAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGTACTCTTTCTGACTACAAT 349829 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || || | || || | | |||||||| Sbjct 349830 ATCCAGAAAGAATCTACTCTCCACCTTGTTCTTAGGCTCAGAGGCGG 349876 >seq6499 Length=11414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||| ||| | || || ||| | | Sbjct 1355 ATGCAGATCTTTGTTAAGACTCTCACAGGCAAGACCATTACCTTGGAGGTTGAGCCATCA 1296 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | ||||| | || ||||| ||||| || | || ||| Sbjct 1295 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGATAAAGAAGGAATCCCACCAGATCAA 1236 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || || |||||||| || || | | || ||| ||||||||| Sbjct 1235 CAGAGGTTGATTTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAAC 1176 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||||||| | || || ||| | || || ||||||||||| || Sbjct 1175 ATACAAAAGGAGTCCACACTCCATCTTGTACTTCGTTTGAGAGGAGG 1129 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| || || ||||| || || ||| | || || ||| | | Sbjct 215 ATGCAGATCTTTGTAAAAACACTTACTGGCAAGACTATTACCTTGGAAGTAGAGCCTTCT 156 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| |||||||| ||||| || | || || Sbjct 155 GACACTATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAG 96 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || || |||||||| || || | | || ||| ||||||||| Sbjct 95 CAGAGGTTGATTTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAAC 36 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||| | || || ||| | || || || Sbjct 35 ATACAAAAGGAGTCCACACTCCATCTTGTACTTCG 1 >seq4446 Length=45416 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGG---TGTCGTCCTTGGCAAACATCACGCCAAATTTT 132606 ||||| || |||||||||||||| | || |||| | ||||||||||| ||| Sbjct 20942 TAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAGCTTTC 20883 Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || ||||| ||||| ||||||||||| ||||||||||| || || | ||||| || | Sbjct 20882 TGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATATGCTCC 20823 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTA 132695 || || || || ||||| | || ||||| Sbjct 20822 ATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500065125300480