Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1485 102 9e-17 >seq1485 Length=220917 Score = 102 bits (112), Expect = 9e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 153870 TCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCAT 153929 |||| |||| ||| || ||| ||| | | | | ||||| |||||||||||||| ||| Sbjct 32035 TCAG-AGATGCTGATGGGAATGCAGCCTGCCGGCTGGCACTTCAGACTAGAGAGCAACAT 31977 Query 153930 ATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATG 153989 ||| | |||||||| || || || ||||| || ||||| |||||| | || || || ||| Sbjct 31976 ATCCGCAGAGACAAGGCCACTAGCAACATATGTACAGCACAGGCATTACTCGCAAACATG 31917 Query 153990 TCTGGATTCTATGCAGCATATCATGG 154015 |||| | ||||||| |||||||| Sbjct 31916 TCTGCCATGTATGCAGTCTATCATGG 31891 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 154957 AGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGT 155016 |||| ||| | |||||||||||| | ||||| || ||||| || ||| || | | Sbjct 21092 AGGTTTATTTGGATGGAGCAAATATGAATGCTCAAGTAGGGCTTTGCTGCCCAGGTCATT 21033 Query 155017 ATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTG 155076 |||| ||||||||| || || || | || |||||||| ||||| || ||||| || | Sbjct 21032 ATGGGTCAGATGTATCGCACCTTAATCTTCACAAAACATTTTGTATACCTCATGGTGGAG 20973 Query 155077 GAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||| || || | || ||||| || || Sbjct 20972 GAGGCCCAGGAATGGGGCCTATTGGAGT 20945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579088109964480