Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6499 116 2e-21 seq684 98.7 6e-16 seq1688 87.8 1e-12 >seq6499 Length=11414 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||||||| | ||| | ||||| || ||||||||||||||||||||| || Sbjct 673 CCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAG 732 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || | ||| ||||| ||||| || || | ||||| ||| | || Sbjct 733 AGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 792 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| ||| || | | |||| ||| | ||| || Sbjct 793 ATACCTTCTTTATCCTGAATCTTTGCTTTCACATTTTCAATCGTATCAGATGGCTCGACT 852 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| ||||| |||||||| || |||||||||||||| Sbjct 853 TCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCAT 899 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || |||||||| ||||| | || |||| |||| ||||| || || || Sbjct 937 TCTTTCTGGATATTATAGTCTGAAAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 996 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || || ||| | || | |||||||| || ||||| ||| || | Sbjct 997 ATCAATCTCTGTTGATCTGGAGGGATTCCCTCCTTATCCTGTATCTTAGCTTTAACATTT 1056 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || || || || | || |||||||| || ||||| ||||||||| Sbjct 1057 TCAATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTACCTGTGAGTGTCTTCACA 1116 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 1117 AAAATCTGCATA 1128 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | || | || | |||| || || || ||||| ||||| || Sbjct 1129 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 1188 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| || |||||||| || ||||| || | | || || ||| | || Sbjct 1189 AGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAAATCAACCTCTGTTGATCTGGTGGG 1248 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||| || ||||| | | || | || | |||||| Sbjct 1249 ATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATAGTATCTGATGGCTCAACC 1308 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || ||||||||||| ||||||||||||||| Sbjct 1309 TCCAAGGTAATGGTCTTGCCTGTGAGAGTCTTAACAAAGATCTGCATA 1356 >seq684 Length=498857 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||||||||| || || | || |||| || ||||| || || ||||| Sbjct 350296 TCTTTTTGAATGTTATAGTCAGAGAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAG 350237 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| ||| | || | || || ||||| |||||| ||| || | Sbjct 350236 ATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTT 350177 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | ||| ||||| || || || |||||||| ||| Sbjct 350176 TCGATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACA 350117 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 350116 AAGATCTGCATA 350105 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | || | || | |||| || || || ||||| ||||| || Sbjct 349648 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 349589 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| || |||||||| || ||||| ||||| | ||||| ||| | || Sbjct 349588 AGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGA 349529 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||| || ||||| | | |||| || | |||||| Sbjct 349528 ATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAACC 349469 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || |||||||| || ||||||||||||||| Sbjct 349468 TCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCATA 349421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||| | |||| ||| ||||||||||||||| || || | Sbjct 349194 TTCCTCCACGGAGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAG 349135 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | |||| || ||||||||||| |||||||| | | || || ||| | | Sbjct 349134 AGAGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGTG 349075 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| ||||| | | || | ||| | |||| Sbjct 349074 GGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCAA 349015 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || || ||||| |||||||| |||||||| Sbjct 349014 CTTCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 348966 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || |||||||| ||||| | || |||| |||| || || || ||||| Sbjct 348700 TCTTTCTGGATATTATAGTCTGAAAGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAG 348641 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | || |||||| | || | || || || || ||| ||| || || | Sbjct 348640 ATCAACCTCTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGAATTTTCGCCTTAACATTT 348581 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | ||| ||||| || || ||||||||||| ||| Sbjct 348580 TCAATTGTATCAGACGGCTCAACTTCCAAGGTGATGGTCTTGCCTGTGAGAGTCTTTACA 348521 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 348520 AAGATCTGCATA 348509 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| || || ||||| ||||| | ||| |||| |||| || || || ||||| Sbjct 350069 TTCTTTCTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAA 350010 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | || |||||| | || | || || || || ||| ||| || || Sbjct 350009 GATCAACCTCTGTTGGTCTGGGGGGATACCTTCTTTATCCTGAATTTTCGCCTTAACATT 349950 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||||| || | ||| ||||| || || || |||||||| || Sbjct 349949 TTCAATTGTATCAGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAAC 349890 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 349889 GAAGATCTGCATA 349877 >seq1688 Length=171348 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||||||||| |||||||| || || ||| | |||| |||| ||||| || ||||| | Sbjct 124680 CTTTCTGAATATTATAGTCAGATAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAA 124621 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 ||| | |||||||| | || | || ||||| || |||||| || || | Sbjct 124620 TTAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTTT 124561 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || | ||| || || | ||| || || || |||||||| || || |||| Sbjct 124560 CGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACAA 124501 Query 34972 AGATCTGCATATT 34984 | ||||||||||| Sbjct 124500 AAATCTGCATATT 124488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324565461639216