Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq295 120 3e-22 seq4446 118 1e-21 seq11114 82.4 9e-11 >seq295 Length=498498 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| |||||||| |||| |||||| ||||| || || | || || |||||||| ||| Sbjct 344713 TTATTTCCTCCTTGGTCTACATATCTTGCAGTGTTATTGAATACCCTCAACATTGGAACA 344772 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 || ||||||||||| ||||| ||||| | |||| | | || | | | || | | Sbjct 344773 ATTCCATTTGATATTCCATTAGTTCCAGCAATAAATGTCCCTTTGGAACGAATGCAATGA 344832 Query 48474 AT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 || || ||| || |||||||| || |||| ||||| ||||| | || | |||| Sbjct 344833 ATGTGCAAT-CCAATACCACCAGCAGTTTTGGATATGAGAGCTGTTTGCTTCAAAGTATT 344891 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||| ||||| ||||| |||||| |||| || || |||||||| Sbjct 344892 GTAAATGCCTTCAATACTGTCATCTTGCATAGCTAGGAGGAAACAACT 344939 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/118 (78%), Gaps = 6/118 (5%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTA---TATATATTACTTGTATATGGTTCTATA 47384 |||||||| ||||| || || ||| ||| |||||||| ||| |||||||| | | Sbjct 324046 TGAAATTCCCCAGAGAGAAC---ACGCCTAGAATATATATTTGATGTGTATGGTTCGAAA 324102 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA 47442 || ||||| ||||||| ||||| |||||||||||||||||||| | |||| |||| Sbjct 324103 GACTCATTGTTTCCAAGTATTTGGGCAGTTGATGCTGTAGGCATTGGAGCAATCAATA 324160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 |||||| | ||||||||||| || || | || | |||||| ||||||| || || Sbjct 344143 AGTATAAAGTTTCTCAAATTCTTCGCCCCAAGTATCAGATAACCCCGGACATTTATGGGG 344202 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 |||||| | ||| | |||| | || || |||||| | ||| |||||||| Sbjct 344203 ACACATAAGGCTCCATTTTTCATTAGAAAAAACCCTTTCCATAAAAAGATCAGGTATCCA 344262 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 | || ||| ||||| || | || | |||||| || ||| | || | || | || Sbjct 344263 TAATGCATAAAACAAATCTCTTGCTCGAACTTCTTCTTTCCCAGTGTTTTTCTTCAAATC 344322 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 |||||| || | | ||| |||||||| ||||||||||| Sbjct 344323 AAGAAATTCTAACACATCTGCATGCCAGGGTTCTAAATA 344361 >seq4446 Length=45416 Score = 118 bits (130), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 |||| |||| |||||||| |||||||| |||||||||| ||||| || |||||||| || Sbjct 5411 AATACCTTT-GATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTA 5353 Query 19503 CATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 ||| ||||| |||||| |||||| || ||||||||||||||||| Sbjct 5352 CATCTTCCAAATATCATGATATTCAATGGGAAATATAACAAATCT 5308 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTT 18671 |||||||||| ||||||||| |||| | | ||| | || || ||| || || ||| Sbjct 20943 TTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAGCTTT 20884 Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 || ||||| | ||| |||| ||||||||||||||||| || || | ||| ||| || Sbjct 20883 CTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATATGCTC 20824 Query 18732 CATAAAATCAAATGGATTTTTTACATTATA 18761 ||| || |||||||| ||| || |||| || Sbjct 20823 CATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 >seq11114 Length=6469 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 |||| || | |||||| |||||||| || | ||| || | || ||||| ||||| | | Sbjct 821 CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCAGCGAGCA 880 Query 48976 TAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTA 49035 |||||||||||||| | || || |||| || ||||||| ||||| |||||| Sbjct 881 ATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAATTATCTA 940 Query 49036 ATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTG 49083 |||| || | ||| || | ||| | || ||||||||||||| Sbjct 941 ATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTG 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561987792028080