Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq684 100 2e-16 seq6499 93.3 3e-14 seq1688 91.5 1e-13 >seq684 Length=498857 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || || || || ||| |||||||||||||| || ||||| | |||| Sbjct 348955 AGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGG 348896 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || ||||| ||||| || || | ||| ||||| | |||| || || Sbjct 348895 CCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCT 348836 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| ||| ||| | | || || || | ||| || |||| || Sbjct 348835 TTATCCTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTG 348776 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | |||||| |||||||||||||| Sbjct 348775 ATGGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| || ||||||| | ||| | || ||||||||||| || ||||| Sbjct 349384 TCCTTTTGAATATTATAGTCAGATAATGTACGACCATCCTCCAACTGCTTGCCAGCAAAA 349325 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | ||| || ||||| | ||||| || |||||||| || || || ||| Sbjct 349324 ATTAATCGTTGCTGATCAGGGGGAATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTT 349265 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | |||||||| | ||||| || || || || | ||| || ||| Sbjct 349264 TCAATAGTGTCAGAGGGTTCCACCTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACA 349205 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 349204 AAAATTTGCAT 349194 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || |||||||| ||||| ||| | || | || ||||| |||||||| ||||| Sbjct 349840 TCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAG 349781 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | |||||| || | ||||| || ||||| || || || ||| ||| Sbjct 349780 ATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGTATTTTAGCTTTAACATTC 349721 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||| || | || || ||||| || || | |||||| ||| Sbjct 349720 TCGATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 349661 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 349660 AAAATCTGCAT 349650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | || | ||| || ||| ||||| ||||| ||||||||||| ||| ||| Sbjct 349183 AGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTTCTT 349124 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || |||||||||| | ||||||||| | || | || || Sbjct 349123 CCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGGGATTCCTTCT 349064 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || | || || || | ||| Sbjct 349063 TTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCAACTTCTAATGTA 349004 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| |||||||||||||| Sbjct 349003 ATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 348966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || ||||| || || |||||||||||| || || ||||| || | || Sbjct 350323 AGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAGAGCGTACGG 350264 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| |||| | ||| ||||| | |||| || || Sbjct 350263 CCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCT 350204 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||||||| | | | || || | ||| || |||| || Sbjct 350203 TTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACTTCCAAGGTG 350144 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 350143 ATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 >seq6499 Length=11414 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| ||||| ||| |||||||| ||||||||||| ||| ||| | || || Sbjct 463 ACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 522 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| || || |||| | ||| ||||| | |||| || || ||||| Sbjct 523 AGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGG 582 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || ||||| | ||| || |||| || || || || Sbjct 583 ATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTACTTCCAGGGTGATAGTCTTG 642 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||||||||| || ||||| Sbjct 643 CCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | || | ||| || || |||||| || ||||| || || || Sbjct 900 GCCACCTCTGAGGCGAAGGACTAGATGGAGAGTAGACTCTTTCTGGATATTATAGTCTGA 959 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || ||||| || ||||| || || |||| || ||||||||| | || Sbjct 960 AAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGAGG 1019 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||| || ||||| ||| ||| | | | || || | ||||| Sbjct 1020 GATTCCCTCCTTATCCTGTATCTTAGCTTTAACATTTTCAATGGTATCAGAGGGTTCCAC 1079 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | || || |||||||||||||| Sbjct 1080 TTCTAAAGTGATGGTTTTACCTGTGAGTGTCTTCACAAAAATCTGCAT 1127 >seq1688 Length=171348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| |||||||| || ||||||||| ||| | || ||||| || ||||| ||||| | Sbjct 124680 CTTTCTGAATATTATAGTCAGATAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAA 124621 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | | | ||| || || | |||| || ||||| || |||||| || ||| Sbjct 124620 TTAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTTT 124561 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | ||||| | ||| ||||| | ||||| || || ||||| | ||||| |||| Sbjct 124560 CGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACAA 124501 Query 48757 AAATCTGCAT 48766 |||||||||| Sbjct 124500 AAATCTGCAT 124491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380857643816706