Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq684 98.7 8e-16 seq6499 91.5 1e-13 >seq684 Length=498857 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || ||||| ||| ||| || || || Sbjct 348738 ATGCAGATTTTTGTGAAAACTCTAACAGGAAAGACCATCACCTTGGAAGTTGAGCCATCT 348797 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || || ||||| || | || |||||| Sbjct 348798 GATACTATTGAAAATGTGAAAGCAAAAATTCAG-GATAAAGAAGGTATTCCTCCAGATCA 348856 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || |||||||| |||||| ||| || | || ||||| Sbjct 348857 GCAGAGGCTAATCTTTGCAGGTAAACAATTAGAAGATGGCCGAACCTTGTCTGACTATAA 348916 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||||||| ||||| ||| | || || Sbjct 348917 TATTCAAAAAGAATCCACTCTTCACTTAGTTTT 348949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| | || || ||||| ||||| ||| ||||| || Sbjct 348965 AATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACTATTACATTAGAAGTTGAACCATC 349024 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| || ||| |||||||| ||| | || |||||| Sbjct 349025 TGACACTATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 349084 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | || ||||| || ||||| | |||||| | |||| | | ||||| || Sbjct 349085 ACAGAGGTTGATATTTGCTGGAAAACAGCTTGAAGATGGAAGAACTCTCTCTGATTACAA 349144 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||| |||||||| ||||| || Sbjct 349145 CATTCAGAAAGAATCCACTCTTCA 349168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||| || ||||| ||||||||||| || || ||||| ||| ||| ||| || Sbjct 348278 AAAAATGCAGATCTTTGTGAAAACATTAACTGGCAAGACCATCACCTTGGAAGTGGAGCC 348337 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | ||| || ||| |||||||| ||| | || ||| Sbjct 348338 CTCTGATACCATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCAGA 348397 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| || | || ||||| || || || | |||||| ||| || | || || Sbjct 348398 CCAACAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACGTTGTCTGACTA 348457 Query 28730 TAACATTCAAAAAGAATCTACTCTGCA 28756 ||| || ||||||||||||||||| || Sbjct 348458 TAATATCCAAAAAGAATCTACTCTTCA 348484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || ||||| || |||||| || Sbjct 349193 AATGCAAATTTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTGGAACCCTC 349252 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGCCCGTAGATC 28671 || || | | || | ||| |||||| ||||| || |||| | ||| | |||| Sbjct 349253 TGACACTATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCT-GATC 349311 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTA 28729 | || || | || ||||| ||||| || ||||| ||| || | | ||| | || || Sbjct 349312 AGCAACGATTAATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACATTAT--CTGACTA 349369 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||| |||||||||||||| | || | || ||| ||||||| || Sbjct 349370 TAATATTCAAAAGGAATCTACTCTGCATCTTGTCCTTAGGTTAAGAGGAGGTAT 349423 >seq6499 Length=11414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||||||| | || || || || || ||| ||| || || ||| Sbjct 671 ATGCAAATCTTTGTAAAAACACTTACTGGCAAGACTATCACCCTGGAAGTAGAGCCATCA 612 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| |||||||| ||| | || |||||| Sbjct 611 GATACTATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAG 552 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | ||||| || || || || | |||||| | |||| | | ||||| ||| Sbjct 551 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGAACTCTCTCTGATTACAAC 492 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || || || || |||| | |||| ||||||| || Sbjct 491 ATTCAAAAGGAGTCAACGCTTCATCTGGTCCTTCGATTGAGAGGAGGCAT 442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||| | || ||||||||||| || ||| |||||| || Sbjct 1127 ATGCAGATTTTTGTGAAGACACTCACAGGTAAAACCATCACTTTAGAAGTGGAACCCTCT 1068 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || || || || |||||| | || ||||||| Sbjct 1067 GATACCATTGAAAATGTTAAAGCTAAGATACAGGATAAGGAGGGAATCCCTCCAGATCAA 1008 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | ||||| || || ||||||||||||||| | ||| | | || ||||| Sbjct 1007 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCAGACTATAAT 948 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || ||||| |||||||| || Sbjct 947 ATCCAGAAAGAGTCTACTCTCCA 925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425315510457138