Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq295 95.1 4e-14 seq1358 87.8 5e-12 >seq295 Length=498498 Score = 95.1 bits (104), Expect = 4e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || || |||||||| | ||||| |||||||| || | | ||| |||| ||| Sbjct 344716 TTTCCTCCTTGGTCTACATATCTTGCAGTGTTATTGAATACCCTCAACATTGGAACAATT 344775 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| || | ||||| ||||| |||| | || || |||| |||||| Sbjct 344776 CCATTTGATATTCCATTAGTTCCAGCAATAAATGTCCCTTTGGAACGAATGCAATGAATG 344835 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || | |||||||||||| | ||| || || |||| || ||| | ||||||| || Sbjct 344836 TGCAATCCAATACCACCAGCAGTTTTGGATATGAGAGCTGTTTGCTTCAAAGTATTGTAA 344895 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAG 156274 || ||||||||| ||||||| ||| | ||| || Sbjct 344896 ATGCCTTCAATACTGTCATCTTGCATAGCTAGGAG 344930 >seq1358 Length=297261 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/122 (76%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 301831 GGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGA 301890 || |||||| |||||||||| || || | |||||||||||||||||||||||||| Sbjct 268755 GGCACACCAAGGGTTACGTTT---TTTGAGGACACACCAGCAAAGTGGAAAGTATTCAGT 268699 Query 301891 GTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCCT 301950 || | ||||| | |||||||||| ||| || || || | ||||||||| || || Sbjct 268698 GTCATCTGAGTGGCAGGCTCACCAAGACTCTGGGCAGCCAGTGCACCAACCATCTCACCA 268639 Query 301951 GG 301952 || Sbjct 268638 GG 268637 Score = 86.0 bits (94), Expect = 2e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 302606 AACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCAT 302665 |||||||| || ||||| ||||| |||||||||||||| | ||||| |||||||||| Sbjct 265540 AACCAGTTTCAGCAGTTTTGACAGCAGTATCAATTAGACCTTCTCGACCTCCCATAGCAT 265481 Query 302666 GGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||| || | ||| || | || ||| | ||| |||| ||||| || | | Sbjct 265480 GGAAAAAAAATTCTGAAGGAGTCAATCCAGCAAGGTATGAGTTCTCTACGAATCCTCTTG 265421 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCT-GTTCTCATAGCCGTAT 302784 || || || ||| || | || || || || || || |||| | |||| || Sbjct 265420 ATTCTGGACCATAGTCATCTTTTATGAAATGAGGGAGTGTTCTCTTTCTGA-AGCCAAAT 265362 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || ||||||||||| || ||||| ||||| |||| Sbjct 265361 GGAATACGCTTTCCTTCTACGTTTTGCTGACCCA 265328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471492833327814