Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6499 123 2e-23 seq684 95.1 8e-15 >seq6499 Length=11414 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||||||| || || ||||||| || || ||||||||||||||||| || Sbjct 673 CCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAG 732 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || || | |||||||| || |||||||| | ||||| ||| | || Sbjct 733 AGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 792 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || ||| ||| || | | |||| ||| | |||||| Sbjct 793 ATACCTTCTTTATCCTGAATCTTTGCTTTCACATTTTCAATCGTATCAGATGGCTCGACT 852 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| ||||||||||| ||||| || || ||||||||||||||| Sbjct 853 TCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCATG 900 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || || || ||||| || || | ||| |||||| ||||| || ||||| || Sbjct 217 CCTCCTCTTAATCTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGAG 276 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || || ||||| || |||||||||| | ||||| ||| | || Sbjct 277 AGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 336 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | ||| || ||| || | | || | ||| | ||| || Sbjct 337 ATACCTTCCTTATCCTGTATCTTAGCTTTTACATTTTCGATTGTGTCAGACGGCTCCACT 396 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | |||||||||||| || ||||| || || |||||||| |||||| Sbjct 397 TCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAACAAAGATTTGCATG 444 >seq684 Length=498857 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || |||||||| || || | || |||| |||| |||||| || || || Sbjct 348701 CTCTTTCTGGATATTATAGTCTGAAAGAGTACGGCCATCTTCCAATTGCTTACCAGCAAA 348642 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | || |||||| | || | || || || || | ||||| || || Sbjct 348641 GATCAACCTCTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGAATTTTCGCCTTAACATT 348582 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| | ||| || || | ||| |||||||| || ||||| |||||||| Sbjct 348581 TTCAATTGTATCAGACGGCTCAACTTCCAAGGTGATGGTCTTGCCTGTGAGAGTCTTTAC 348522 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 348521 AAAGATCTGCAT 348510 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || |||||||||||||| || || | || |||| || || ||||| || || || Sbjct 350297 CTCTTTTTGAATGTTATAGTCAGAGAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAA 350238 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | ||||| ||| | || | || || ||||| | || || ||| || Sbjct 350237 GATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATT 350178 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| | ||| || || | ||| |||||||| || || || ||||| || Sbjct 350177 TTCGATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAAC 350118 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 350117 AAAGATCTGCAT 350106 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | || || || || | ||| |||||| || ||||| ||||| || Sbjct 349648 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 349589 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| || || || || || || ||||| || | ||||| ||| | || Sbjct 349588 AGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGA 349529 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | ||||| ||||| | | |||| || | ||| || Sbjct 349528 ATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAACC 349469 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || ||||| || || |||||||||||||| Sbjct 349468 TCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325624439320418