Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq684 156 3e-33 seq6499 140 2e-28 >seq684 Length=498857 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | || || || | |||||| ||||||||||| |||||||| ||||| | Sbjct 349193 TCCTCCACGGAGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGA 349134 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || || ||||| |||||| ||||||| || || ||||| || || Sbjct 349133 GAGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGG 349074 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| | || |||||| |||| | ||||||||| |||| || Sbjct 349073 GATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCAAC 349014 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | || |||||||||||||| | ||||| ||||| ||||||||| Sbjct 349013 TTCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCATT 348965 Score = 143 bits (158), Expect = 2e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || ||||| || || || ||||||||||||||||| || | | || || | Sbjct 350320 CGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAGAGCGTACGGCCA 350261 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 350260 TCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTG 350201 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | ||| ||| |||| | |||||||| | || ||||| | || || Sbjct 350200 TCTTG-AATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACTTCCAAGGTGAT 350142 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | || |||||||| |||||||| Sbjct 350141 GGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 140 bits (154), Expect = 2e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || || ||||| ||||||||||||||||| ||||| || | | ||| || | Sbjct 348952 CGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCA 348893 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| || ||| | || | || |||||||| || |||||||| ||||| Sbjct 348892 TCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTA 348833 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || |||||||| ||| ||| |||| | ||| ||||| | || ||||| | || || Sbjct 348832 TCCTG-AATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTGAT 348774 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| ||||| ||||| |||||||| Sbjct 348773 GGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| || ||||||||||| || ||||| || | | || || ||| Sbjct 348493 AGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGACAACGTTCGGCCATCT 348434 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || |||||| | ||||| ||||| || || || || || || |||||||| Sbjct 348433 TCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCC 348374 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || ||| | || | || ||||| | || ||||| | || || || Sbjct 348373 TGGATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCCACTTCCAAGGTGATGGTC 348314 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||| ||||| ||||| ||||||||||| Sbjct 348313 TTGCCAGTTAATGTTTTCACAAAGATCTGCATTTT 348279 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || |||||||| || || || || || | || || || ||| || | ||| Sbjct 349852 TGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTGC 349793 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| || || || || || ||||| || || || ||||||| ||| Sbjct 349792 TTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGTATTTTA 349733 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| | || | || ||||| |||| ||||| | ||| || ||||||||||| Sbjct 349732 GCTTTAACATTCTCGATGGTATCAGAGGGTTCCACTTCTAAAGTGATGGTTTTGCCAGTA 349673 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| |||||||| Sbjct 349672 AGAGTTTTCACAAAAATCTGCAT 349650 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||||||| || || | ||| || ||||| || ||||| ||||| || || | Sbjct 349648 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 349589 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || ||||| || ||| | || | || |||||||| || ||| Sbjct 349588 AGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGA 349529 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| || || |||||| | |||||| |||| | || || || | || || Sbjct 349528 ATTCCTTCTTTATCCTG-AATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAAC 349470 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || | ||||||||||| |||||||| Sbjct 349469 CTCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 >seq6499 Length=11414 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| || || |||| ||||||||| || || ||||||||||| ||||| | Sbjct 445 CCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAG 504 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || || || ||||| | ||||| || |||||||| || ||| Sbjct 505 AGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGA 564 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || || ||| | || | ||| || || | |||||| Sbjct 565 ATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTACT 624 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| |||||||| | ||||| ||||| || ||||| Sbjct 625 TCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || ||||| || ||||| ||||| || || | | || | | Sbjct 1 CGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCA 60 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | ||||| || |||||||| || || || || |||||| Sbjct 61 TCCTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTG 120 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || ||| | || | |||||||||| | |||||||| | || ||| Sbjct 121 TCTTGGATCTTGGCCTTCACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATA 180 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||||| ||||| |||||||| Sbjct 181 GTCTTGCCAGTAAGTGTTTTTACAAAGATCTGCAT 215 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | || || | ||| || || || || |||||||| || || || | Sbjct 217 CCTCCTCTTAATCTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGAG 276 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || ||||| | ||||| || |||||||| || ||| Sbjct 277 AGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 336 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || || |||| || ||| ||| |||| | |||||||| | || ||| Sbjct 337 ATACCTTCCTTATCCTGTATCTTAGCTTTTACATTTTCGATTGTGTCAGACGGCTCCACT 396 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || || ||||| | ||||||||||| || ||||| Sbjct 397 TCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 443 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || | ||||| || |||||||| ||||||||||| || | Sbjct 673 CCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGAG 732 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || | || || |||||| | |||| || |||||||| || ||| Sbjct 733 AGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 792 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| || || ||| |||| ||| ||| |||| | || ||||| | || || Sbjct 793 ATACCTTCTTTATCCTG-AATCTTTGCTTTCACATTTTCAATCGTATCAGATGGCTCGAC 851 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || || || || | ||||| ||||| |||||||| Sbjct 852 TTCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385138345138302