Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq684 118 9e-22 seq6499 107 2e-18 >seq684 Length=498857 Score = 118 bits (130), Expect = 9e-22 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||| ||||| | ||||| | ||||| || |||| | Sbjct 348738 ATGCAGATTTTTGTGAAAACTCTAACAGGAAAGACCATCACCTTGGAAGTTGA-GCCATC 348796 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| ||||||| |||||||| ||||| || || ||||| Sbjct 348797 TGATACTATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCA 348856 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| || || || | | || |||||| | ||||||| ||| |||| | | || Sbjct 348857 GCAGAGGCTAATCTTTGCAGGTAAACAATTAGAAGATGGCCGAACCTTGTCTG--ACTAT 348914 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||||||||| |||| ||||| || Sbjct 348915 AATATTCAAAAAGAATCCACTCTTCACTTAGTTTT 348949 Score = 82.4 bits (90), Expect = 7e-11 Identities = 167/245 (68%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 |||||| |||| || |||| | ||||| ||||||||||| || || | ||||| | Sbjct 348268 TTTTCAGGTAAAAAA--TGCAGATCTTTGTGAAAACATTAACTGGCAAGACCATCACCTT 348325 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 ||||| || || ||||| || ||| | || || || || || ||||| || Sbjct 348326 GGAAGTGGAGCCCTCTGATACCATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGG 348385 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA- 25337 || || || || || ||||| | |||| | || || || || ||||||| ||| Sbjct 348386 AATCCCTCCAGACCAACAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAAC 348445 Query 25338 -ATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 |||| || || ||||| ||||||||||| || ||||| | || | ||| ||||| Sbjct 348446 GTTGTC--TGACTATAATATCCAAAAAGAATCTACTCTTCATCTTGTCCTTAGACTGAGA 348503 Query 25397 GGAGG 25401 || || Sbjct 348504 GGGGG 348508 >seq6499 Length=11414 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || || | ||||| | ||||| || |||| | Sbjct 671 ATGCAAATCTTTGTAAAAACACTTACTGGCAAGACTATCACCCTGGAAGTAGA-GCCATC 613 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| ||| | || || || || || ||||| || || || || ||||| Sbjct 612 AGATACTATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 553 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | || || || || || ||||||| |||| | || |||||||| Sbjct 552 GCAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGAACTCTCTCTGATTACAA 493 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| || || || ||||| | || | ||||||||||||| Sbjct 492 CATTCAAAAGGAGTCAACGCTTCATCTGGTCCTTCGATTGAGAGGAGG 445 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| |||||| | || || || | || || | ||||| || ||| Sbjct 444 CATGCAAATCTTTGTTAAAACACTCACTGGTAAGACCATAACCCTGGAAGTGGA-GCCGT 386 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || ||||| | |||||| || || ||||| || ||||| || || |||| Sbjct 385 CTGACACAATCGAAAATGTAAAAGCTAAGATACAGGATAAGGAAGGTATTCCTCCAGATC 326 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || | || | || || || || || ||||||| | | || || |||| Sbjct 325 AGCAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGACGTACACTCTCAGACTACA 266 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| || || ||| | ||| | || | ||||| |||||||| Sbjct 265 ATATTCAAAAGGAGTCAACCCTCCATCTTGTCCTTAGATTAAGAGGAGG 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444998582303040