Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq684 93.3 4e-14 seq6499 89.7 5e-13 >seq684 Length=498857 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | ||| || || || | || || |||||||| || || || | Sbjct 348966 TTCCACCACGAAGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAG 348907 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||||||| | || || | || ||||| ||||| || | || |||||| || | || Sbjct 348906 ACAAGGTTCGGCCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAG 348847 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | || || ||| ||| |||||||| || | || | | || || | || Sbjct 348846 GAATACCTTCTTTATCC-TGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCA 348788 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||| || || || || | |||||||||||| |||||||| Sbjct 348787 ACTTCCAAGGTGATGGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| || || || || | ||| ||||| | || || |||||||| || ||||| Sbjct 348472 TCTTTTTGGATATTATAGTCAGACAACGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAA 348413 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| || ||||| | ||| | | || |||||| |||||| ||| | | | Sbjct 348412 ATCAACCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTAGCCTTAACATTC 348353 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||||| |||| ||||| || || || || || ||||||||| Sbjct 348352 TCAATGGTATCAGAGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACA 348293 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 348292 AAGATCTGCATT 348281 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||||||||| | | |||| | || || ||||| || || |||||| Sbjct 349156 TCTTTCTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAT 349097 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||| || || | || | | || ||||| |||||| ||| | | || Sbjct 349096 ATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTT 349037 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| || || | || || ||||| || || | |||||||||| Sbjct 349036 TCAATAGTGTCAGATGGTTCAACTTCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACA 348977 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 348976 AAAATCTGCATTC 348964 >seq6499 Length=11414 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||| ||||| || | | || || | || || ||||||||||| || || Sbjct 252 CTCCTTTTGAATATTGTAGTCTGAGAGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAA 311 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| || | ||||| | ||||| ||| ||||| || | | | Sbjct 312 GATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGTATCTTAGCTTTTACATT 371 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || ||||| |||| || || || ||||| || | ||||| || Sbjct 372 TTCGATTGTGTCAGACGGCTCCACTTCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAAC 431 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 432 AAAGATTTGCAT 443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | ||| ||||||||||||||||||||| | | |||| | || || Sbjct 463 ACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 522 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| || || ||||||| |||||| || | |||| | || ||||| | Sbjct 523 AGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGG 582 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | || || | || || |||| ||||| || || Sbjct 583 ATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTACTTCCAGGGTGATAGTCTTG 642 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||| ||||| || ||||| Sbjct 643 CCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450696555407760