Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq684 118 1e-21 seq6499 111 2e-19 >seq684 Length=498857 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | | | || || || || || |||||||||||||| || ||||| Sbjct 349420 CCTCCTCTTAACCTAAGGACAAGATGCAGAGTAGATTCCTTTTGAATATTATAGTCAGAT 349361 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||| ||||| |||||||| || || |||||||| || || Sbjct 349360 AATGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATTAATCGTTGCTGATCAGGGGGA 349301 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| ||||| || || || | ||||| || | |||||| Sbjct 349300 ATCCCTTCCTTGTCTTGGATTTTAGCCTTAACATTTTCAATAGTGTCAGAGGGTTCCACC 349241 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || |||||||| || || || || | ||| ||||| |||||||||||| Sbjct 349240 TCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAAATTTGCATT 349193 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||| | ||| || | || || || || |||||||| || ||||||||||| || | Sbjct 349194 TTCCTCCACGGAGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAG 349135 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | | | || || |||||||| || ||||| ||||| | ||| ||||| || Sbjct 349134 AGAGAGTTCTTCCA-TCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGT 349076 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| ||||| || || ||||| || | ||||| || | ||| Sbjct 349075 GGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCA 349016 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | ||||| ||||| || || | |||||| || ||||| |||||| Sbjct 349015 ACTTCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCATT 348965 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || | || || || || ||||| |||||||| ||||||||||| | Sbjct 349648 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 349589 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || |||||||| |||||||| || | | ||||||||| || || Sbjct 349588 AGAGTTCTTCCA-TCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGG 349530 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || |||||||| ||||| || | || || || | || || Sbjct 349529 AATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAAC 349470 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||||| || || || | ||||||||| || || ||||| Sbjct 349469 CTCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||||| || | || || || || || ||||||||||| ||||| Sbjct 350332 CCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAG 350273 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| || || ||||| ||||| | ||||||||| || || Sbjct 350272 AGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGA 350213 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || ||| || || | ||||| || | || || Sbjct 350212 ATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACT 350153 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || | ||| ||||| || || ||||| Sbjct 350152 TCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| |||| | || || || || || ||||| ||||| || || ||||| | | Sbjct 348508 CCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGAC 348449 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | | | || || ||||| || || ||||||||||| | || || || || || Sbjct 348448 AACGTTCGGCCA-TCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGG 348390 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || || || || || || || | || || || | ||||| Sbjct 348389 GATTCCTTCTTTGTCCTGGATCTTAGCCTTAACATTCTCAATGGTATCAGAGGGCTCCAC 348330 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | || ||||| || || ||||| ||||| || || || |||||||| Sbjct 348329 TTCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCATTTT 348279 >seq6499 Length=11414 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || | || || || || ||||| |||||||| ||||||||||| | Sbjct 1129 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 1188 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || |||||||| |||||||||||||| | ||| ||||| || || Sbjct 1189 AGAGTTCTTCCA-TCCTCAAGCTGTTTACCTGCAAAAATCAACCTCTGTTGATCTGGTGG 1247 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || |||||||| ||||| || | || || || | || || Sbjct 1248 GATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATAGTATCTGATGGCTCAAC 1307 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||||| || || || | ||| ||||| || || ||||| Sbjct 1308 CTCCAAGGTAATGGTCTTGCCTGTGAGAGTCTTAACAAAGATCTGCAT 1355 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || | || || || || || || ||||||||||| |||||||| Sbjct 217 CCTCCTCTTAATCTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGAG 276 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| || || || || ||||| | ||||||||| || || Sbjct 277 AGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 336 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||| || || | |||||| |||| ||||| Sbjct 337 ATACCTTCCTTATCCTGTATCTTAGCTTTTACATTTTCGATTGTGTCAGACGGCTCCACT 396 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || | |||||||| || |||||||| Sbjct 397 TCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAACAAAGATTTGCAT 443 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || || || || ||||| |||||||| ||||||||||| | | | | | | || || Sbjct 7 ACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCA-TCCTC 65 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||||| |||||||||||||| | ||||||||| || || || |||||||| ||||| Sbjct 66 AAGCTGTTTACCTGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTG 125 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || || || || | ||||| || | || || || | ||||| || || Sbjct 126 GATCTTGGCCTTCACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAGTCTT 185 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| || || || ||||| Sbjct 186 GCCAGTAAGTGTTTTTACAAAGATCTGCAT 215 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||| | || || || ||||| || ||||||||||||||||| || | Sbjct 445 CCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAG 504 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || ||||| || || || || ||||| | ||||||||| || || Sbjct 505 AGAGTTCTTCCA-TCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGG 563 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || || || || | || || || | || || Sbjct 564 AATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCTCTAC 623 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | ||||| || || |||||||| Sbjct 624 TTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505289600359440