Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4446 114 2e-20 seq11114 104 3e-17 seq295 98.7 1e-15 >seq4446 Length=45416 Score = 114 bits (126), Expect = 2e-20 Identities = 119/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 39267 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC--TTG-TGACATAACTCCCA 39323 || ||||||| ||| |||| |||| |||| | | ||| | ||| |||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 39324 TTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 39383 ||| ||||||||||| || |||||| || ||||||||||||||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 39384 TTTCCATGAAATCAAACGGATTAGTTGCATTATA 39417 |||||||| ||||| || || |||||||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 Score = 113 bits (124), Expect = 6e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||||| ||| |||||||| ||||||||||| || || || || ||||||||||| ||| Sbjct 5405 TTTGATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTACATCTTC 5346 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 || |||||| |||||| || ||||| ||||||||||| |||| || Sbjct 5345 CAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 >seq11114 Length=6469 Score = 104 bits (114), Expect = 3e-17 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 70327 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCT 70386 ||||| |||| || | |||||| ||||| |||||||||||||| | || |||||||| Sbjct 816 ATTAC--CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCA 873 Query 70387 GCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAAC 70446 || || | ||||| || ||||| | ||||| ||||| || |||| || ||||| Sbjct 874 GCGAGCAATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAA 933 Query 70447 GTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 70506 |||||||||| | || | ||||| ||| ||||| ||||||||||| | ||| Sbjct 934 TTATCTAATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATT 993 Query 70507 T 70507 | Sbjct 994 T 994 >seq295 Length=498498 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||||||||| | || | | || || ||||| || |||||||| | ||| Sbjct 324046 TGAAATTCCCCAGAGAGAACACGCCTAGAATATATATTTGATGTGTATGGTTCGAAAGAC 324105 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| ||||| || ||||| ||||||||||| || ||||| || || | ||||| | Sbjct 324106 TCATTGTTTCCAAGTATTTGGGCAGTTGATGCTGTAGGCATTGGAGCAATCAATAGAGAG 324165 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 ||| | ||||||| | | ||||| ||||| ||| ||| ||||| | | || Sbjct 324166 TTTTTTAGACCATTAGCCAATATTTTTTCTTTCAGAGCAGACCAGTCCCACAAGTTAGTG 324225 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||| |||||||| | ||| || || | ||| Sbjct 324226 GGTTTCACATTCCACATATCATACTGCAAAAT 324257 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 68931 TCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTC 68990 ||| || |||||| |||||| | ||| ||||||||||| ||| | |||| || || Sbjct 330992 TCCTTTGCTTGCAGGTGATCCTTCATAAGTTTCATAAGGACCTGTTTTAGCAGCAAGCTC 331051 Query 68991 ACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 69050 |||||| || |||| ||| || || ||||||||||| || | || ||||| | | Sbjct 331052 ACAACTGGCTTCTAGTGCTCCATAGTAAATTGTTTCAAATAGCTGTTTATTTAATAGTCC 331111 Query 69051 TGCTTCTAGACTATCGAATGGATAATGT-AAAAGAATAAATGCATCTGCCAATCCCTGAA 69109 |||||| ||| || |||||| | | | | | ||||| ||| || || ||||| | Sbjct 331112 AGCTTCTTCACTTTCAAATGGA-AGTCTCATTTGGATAAAAAGATCAGCTAAGCCCTGTA 331170 Query 69110 CCCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 | |||||||| || || | |||| | |||| || || Sbjct 331171 CTCCAATACCAATCGGGCGGTGTCGCATATTAGATCT 331207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 ||||||||||| || |||| ||||| ||||||||||| | || |||| ||| |||| | Sbjct 344713 TTATTTCCTCCTTGGTCTACATATCTTGCAGTGTTATTGAATACCCTCAACATTGGAACA 344772 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 || ||||| ||| | ||||| ||||||| |||| | | ||| | | ||||| | | Sbjct 344773 ATTCCATTTGATATTCCATTAGTTCCAGCAATAAATGTCCCTTTGGAACGAATGCAATGA 344832 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 || | || || || || || |||| || || ||||| | ||||| || | Sbjct 344833 ATGTGCAATCCAATACCACCAGCAGTTTTGGATATGAGAGCTGTTTGCTTCAAAGTATTG 344892 Query 69925 TATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAA 69965 || || || || || || |||||| ||| | || || |||| Sbjct 344893 TAAATGCCTTCAATACTGTCATCTTGCATAGCTAGGAGGAAA 344934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686760925708080