Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1570 107 2e-18 seq4446 104 2e-17 >seq1570 Length=204615 Score = 107 bits (118), Expect = 2e-18 Identities = 121/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG---GTG 19606 |||| || ||||| | ||||| |||| || || || || |||||||||| ||| Sbjct 63046 TGCATATAATAATTTTGGATGAGATGGATGCGATTTGCAAAGCCAGAGGTTCTGTTGGTG 62987 Query 19607 TAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 ||| || || ||||||||||||||||| ||||| |||| ||| |||| |||||| Sbjct 62986 GCAATACGGGTGTTCATGACACTGTTGTCAACCAACTTTTGTCTAAAATAGATGGTGTTG 62927 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 | || || || ||||||||| |||| || ||||| |||||| Sbjct 62926 ATCAGCTCAACAATATTTTAATTATAGGAATGACCAATAGA 62886 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 || ||||| ||||| ||| | | |||||||| || || || ||||||||| ||| Sbjct 66158 GGTTGTAACCATGTAAAAGGAATCCTTCTTTATGGTCCTCCCGGAACTGGAAAAACCTTA 66099 Query 19390 ATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGT 19446 || || ||| || | | ||| ||| | ||| | ||||| |||||||| ||||| Sbjct 66098 ATGGCTAGACAAATAGGCAAAATGTTAAATGCAAGAGAACCT---AAAATTGTTAATGGC 66042 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 || |||| || ||||||||||||| |||| |||| ||| | || | | ||||| Sbjct 66041 CCCCAAATATTGGATAAATATGTAGGAGAATCAGAAGCTAATATTAGAAGGCTCTTTGCA 65982 Query 19507 GACGCTGAAGAAGAA 19521 || || ||||| ||| Sbjct 65981 GATGCCGAAGAGGAA 65967 >seq4446 Length=45416 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| | ||||| ||| |||||||||| || ||| | |||||||||||||| | Sbjct 5308 AGATTTGTTATATTTCCCATTGAATATCATGATATTTGGAAGATGTACAAAAAAGCCGAA 5367 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTT 43788 || ||||||||||||||||||||||||||||| Sbjct 5368 GCTTCATTTTGGACAGCAGAAGAAGTTGATTT 5399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397372576718110