Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6499 104 2e-17 seq684 100 2e-16 >seq6499 Length=11414 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| || | |||| ||| | ||| || || |||||||| ||||| || Sbjct 443 TGCCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAG 502 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | ||||| ||||| ||||| ||| | || | | ||| ||||| || | Sbjct 503 AGAGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTG 562 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | || ||||| || ||||||| |||| | || | ||| |||| ||||| | Sbjct 563 GAATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGGCT-CT 621 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || |||| ||||| || || ||||| ||||||||||||||| Sbjct 622 ACTTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCATA 672 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||||||||| | | || | ||||| ||||| ||||| Sbjct 247 GTTGACTCCTTTTGAATATTGTAGTCTGAGAGTGTACGTCCATCTTCAAGCTGCTTACCA 306 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||| ||||| || || | ||| || ||||| ||||| ||| Sbjct 307 GCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGTATCTTAGCTTTT 366 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | | || ||||| || ||||| | || || || || ||| Sbjct 367 ACATTTTCGATTGTGTCAGACGGCTCCACTTCCAGGGTTATGGTCTTACCAGTGAGTGTT 426 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 427 TTAACAAAGATTTGCAT 443 >seq684 Length=498857 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || || || | || || |||||||||||||| ||||| || | | || | Sbjct 348952 CGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGACAAGGTTCGGCCA 348893 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||||| || | || || | ||| ||||| || || | ||| |||||| Sbjct 348892 TCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGAATACCTTCTTTA 348833 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || || || ||||| |||| | ||| || | ||||| ||||||| | || || Sbjct 348832 TCCTGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCT-CAACTTCCAAGGTGAT 348774 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || |||||||||||||| || |||||| Sbjct 348773 GGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCATA 348737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||| | || | ||| | || || ||||| ||||| ||||| || Sbjct 349192 CCTCCACGGAGCCGAAGAACAAGATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAG 349133 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| |||||||| || || | || | | ||||||||| || || Sbjct 349132 AGAGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGGG 349073 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| || | |||| | |||||| | | ||||||| Sbjct 349072 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATAGTGTCAGATGGTTCAACT 349013 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || |||| |||||| || |||||||||||||| || ||||| Sbjct 349012 TCTAATGTAATAGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 348966 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| || ||||| | || || ||||||||||| || ||||| Sbjct 350332 CCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAG 350273 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| ||||| ||||| || | || | | ||| ||||| || || Sbjct 350272 AGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGA 350213 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | || ||||| || |||||| ||| | |||| | ||||| | |||| ||||| Sbjct 350212 ATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGC-TCAAC 350154 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | || || | ||||| || ||||| || |||||||| |||||| Sbjct 350153 TTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCATA 350105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424845209190864