Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6499 116 2e-21 seq684 107 1e-18 seq1688 89.7 3e-13 >seq6499 Length=11414 Score = 116 bits (128), Expect = 2e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | || | ||||||||| ||| || || || ||||| ||||| Sbjct 900 GCCACCTCTGAGGCGAAGGACTAGATGGAGAGTAGACTCTTTCTGGATATTATAGTCTGA 959 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | ||||||||| || || || || | |||||| || || || Sbjct 960 AAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGAGG 1019 Query 34599 CACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCC 34656 | ||||||||| || ||| ||||| | |||||| | ||| || || | ||| Sbjct 1020 GATTCCCTCCTTATCCTGT-ATCTTA-GCTTTAACATTTTCAATGGTATCAGAGGGTTCC 1077 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || |||||||| || | || ||||||||||||||||| Sbjct 1078 ACTTCTAAAGTGATGGTTTTACCTGTGAGTGTCTTCACAAAAATCTGCAT 1127 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || |||||||||||| || || ||||| ||||| || | |||||||| || Sbjct 240 ATGGAGGGTTGACTCCTTTTGAATATTGTAGTCTGAGAGTGTACGTCCATCTTCAAGCTG 299 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGTGATCT 34621 ||||| || || || || | ||| || || || || | || ||||| | |||| |||| Sbjct 300 CTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGT-ATCT 358 Query 34622 TTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | ||||| | |||||||| ||||||||||| |||||| || ||||| | Sbjct 359 TAGCTTTTACATTTTCGATTGTGTCAGACGGCTCCACTTCCAGGGTTATGGTCTTACCAG 418 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | | ||||| ||||| || |||||| Sbjct 419 TGAGTGTTTTAACAAAGATTTGCATG 444 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | || | |||| ||| || || ||||||||||||||| ||||| || Sbjct 444 GCCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGA 503 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||| | |||||||| || ||||| || || || || | ||| || || || || Sbjct 504 GAGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGTGG 563 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT--TCGCTCTC 34655 | ||| || |||||| |||| || | || || | ||| || ||| | ||||| Sbjct 564 AATTCCTTCTTTGTCTTGGATC-TTGGCCTTCACATTCTCAATAGTATCTGATGGCTCT- 621 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || || || || || | ||||| ||||| || ||||| Sbjct 622 -ACTTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 >seq684 Length=498857 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || || || |||||| || |||||||| ||||| || || Sbjct 348964 CCACCACGAAGGCGCAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTATAGTCAGAC 348905 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||||||||| ||||| |||| | ||| || || || || Sbjct 348904 AAGGTTCGGCCATCTTCTAATTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGAGGA 348845 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || || || ||| ||||| ||| || | ||| || || ||| || Sbjct 348844 ATACCTTCTTTATCC-TGAATTTTTGCTTTCACATTTTCAATAGTATCAGATGGCTCAAC 348786 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || |||| |||||||||||||||||||| Sbjct 348785 TTCCAAGGTGATGGTCTTTCCTGTTAGAGTTTTCACAAAAATCTGCAT 348738 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| || ||||||||||| ||| |||||||||||||| || || Sbjct 350332 CCTCCACGAAGTCGCAGAACTAAATGGAGAGTTGACTCTTTTTGAATGTTATAGTCAGAG 350273 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || ||||| ||||| || || | ||| || || || || Sbjct 350272 AGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGA 350213 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || |||||| ||||| ||||| | || ||||| ||| ||| Sbjct 350212 ATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCGATGGTGTCAGATGGCTCAACT 350153 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || || ||||| |||||||| Sbjct 350152 TCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 350106 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || | ||| ||||| || ||||| || ||||| || || Sbjct 348508 CCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTCAGAC 348449 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | |||||||| || || || ||||| || || | |||||||| || || Sbjct 348448 AACGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGG 348389 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| || ||||| |||||| | ||||| | ||| || || | |||||| Sbjct 348388 ATTCCTTCTTTGTCCTGGATCTTA-GCCTTAACATTCTCAATGGTATCAGAGGGCTCCAC 348330 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| ||| || || || || ||||| ||||||||||| |||||||| || Sbjct 348329 TTCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCATTTT 348279 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| |||||| || || |||||||| ||||| || || |||| | |||||||| || Sbjct 349169 ATGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTG 349110 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| || |||||||| || | |||||| || || || | ||| || |||||| |||||| Sbjct 349109 TTTTCCAGCAAATATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTT 349050 Query 34623 TTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || | | ||| ||||| || ||||| | || || ||||| || || Sbjct 349049 AGCCTTGACATTTTCAATAGTGTCAGATGGTTCAACTTCTAATGTAATAGTTTTGCCAGT 348990 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | |||||||||||||||||||| Sbjct 348989 AAGAGTTTTCACAAAAATCTGCAT 348966 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| || | | || | |||||||| || || || || || || || ||| Sbjct 349876 CCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTCAGAA 349817 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| ||||| || || | ||||||||| || || Sbjct 349816 AGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGGGGGA 349757 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| || ||| | |||||| | || || || | ||||| Sbjct 349756 ATTCCTTCCTTATCTTGTAT-TTTAGCTTTAACATTCTCGATGGTATCAGAGGGTTCCAC 349698 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | |||||||||||||||||||| Sbjct 349697 TTCTAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 349650 >seq1688 Length=171348 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| ||||| ||||| || || || |||| | ||||| | ||||||||| ||||| Sbjct 124681 CCTTTCTGAATATTATAGTCAGATAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAA 124622 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||| | ||| ||||| || || | ||| ||||| || ||||| | ||||| | Sbjct 124621 ATTAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGAATCTTA-GCCTTAACATT 124563 Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || |||||| ||| || || | ||| || || ||||| || | ||||| || Sbjct 124562 TTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGAC 124503 Query 34695 AAAAATCTGCATGTT 34709 |||||||||||| || Sbjct 124502 AAAAATCTGCATATT 124488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314663540420726