Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq684 87.8 1e-12 >seq684 Length=498857 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||||||||||||||||||||| ||| ||||||| | || || ||| | Sbjct 348965 AATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACTATTACATTAGAAGTTGAACCATC 349024 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || ||||| || || ||||||||||| | || || || Sbjct 349025 TGACACTATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 349084 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 || |||| || ||||| |||||||| | || || | | | | | || |||||||| Sbjct 349085 ACAGAGGTTGATATTTGCTGGAAAACAGCTTGAAGATGGAAGAACTCTCTCTGATTACAA 349144 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| || ||||| |||| | ||| | ||| | || | ||||| || Sbjct 349145 CATTCAGAAAGAATCCACTCTTCATCTTGTTCTTCGGCTCCGTGGAGG 349192 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || ||||||||||| || |||||| |||| || ||| | | Sbjct 349193 AATGCAAATTTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTGGAACCCTC 349252 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || || ||||| ||||| ||||| |||| || || Sbjct 349253 TGACACTATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGATCA 349312 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| ||||||||||| || || || ||||| || | || | || || || || || Sbjct 349313 GCAACGATTAATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACATTATCTGACTATAA 349372 Query 27969 CATCCAAAAAGAGAGCACTTTGCAT 27993 || ||||| || ||| ||||| Sbjct 349373 TATTCAAAAGGAATCTACTCTGCAT 349397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355787706928794