Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6499 89.7 4e-13 seq684 89.7 4e-13 >seq6499 Length=11414 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| || |||| || ||||||||| || || | |||| ||| ||||| ||| || Sbjct 428 TAACAAAGATTTG--CATGCCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTT 485 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| || || ||||| | || |||| | | || |||||||| || || || || || | Sbjct 486 TTGAATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAA 545 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | |||||| || | || | | |||||||| ||| || || | || | | Sbjct 546 CCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAAT 605 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| | ||| || |||| |||||| | || || || || ||||| |||||||| Sbjct 606 AGTATCTGATGGCTCTACTTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGAT 665 Query 39279 TTGCAT 39284 |||||| Sbjct 666 TTGCAT 671 >seq684 Length=498857 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | || | ||| || ||| ||| |||||||| || || || | Sbjct 349648 CCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAG 349589 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | | || ||||||||||| || ||||| || || | |||||| || | || Sbjct 349588 AGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGGTGGA 349529 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| ||| ||||| |||| | | | |||||| | ||| || Sbjct 349528 ATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTCAACC 349469 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | || || || || |||||||||||||| ||||| Sbjct 349468 TCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429455441331686