Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq684 125 5e-24 seq6499 113 3e-20 seq1688 86.0 4e-12 >seq684 Length=498857 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || ||||| | |||||||| | | Sbjct 348738 ATGCAGATTTTTGTGAAAACTCTAACAGGAAAGACCATCACCTTGGAAGTTGAGCCATCT 348797 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | ||| ||||||| || ||||||||| | || |||||||| Sbjct 348798 GATACTATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCAG 348857 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||| ||||| || |||||| | ||||| | || || || || || || Sbjct 348858 CAGAGGCTAATCTTTGCAGGTAAACAATTAGAAGATGGCCGAACCTTGTCTGACTATAAT 348917 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| ||||| | || |||||||| Sbjct 348918 ATTCAAAAAGAATCCACTCTTCACTTAGTTTT 348949 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| || || || ||||| || || | |||||||| | | Sbjct 348965 AATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACTATTACATTAGAAGTTGAACCATC 349024 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 349025 TGACACTATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 349084 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || |||||||| || ||||| || ||||| | | | ||| | |||||||| Sbjct 349085 ACAGAGGTTGATATTTGCTGGAAAACAGCTTGAAGATGGAAGAACTCTCTCTGATTACAA 349144 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| ||||| | ||| | ||| | || | || |||||| Sbjct 349145 CATTCAGAAAGAATCCACTCTTCATCTTGTTCTTCGGCTCCGTGGAGGA 349193 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||| ||||| || || || || || | || ||||| | | Sbjct 349422 ATGCAGATCTTTGTTAAAACTCTCACAGGCAAGACCATTACCTTGGAGGTTGAGCCATCA 349481 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || |||||| || |||||||| | || |||||||| Sbjct 349482 GATACGATTGAAAATGTCAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCAGATCAG 349541 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||| ||||| || ||||| || || || | | | ||| | || |||||| Sbjct 349542 CAGAGGCTAATCTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAAC 349601 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| ||||||||| | ||| | || | | ||| ||||||| Sbjct 349602 ATACAAAAGGAGTCCACACTCCATCTTGTACTTCGTTTGAGAGGAGG 349648 Score = 105 bits (116), Expect = 5e-18 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || || || || || || ||||| | |||||||| | | Sbjct 350106 ATGCAGATCTTTGTTAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCT 350165 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| || ||| ||||||||||| | || |||||||| Sbjct 350166 GACACCATCGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 350225 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATTA 23786 ||| | || || ||||| || || || || ||||| || |||| || | || || Sbjct 350226 CAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACGCTCTCT----GACTA 350281 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||||||||| || | ||||||||| Sbjct 350282 TAACATTCAAAAAGAGTCAACTCTCCATTTAGTT 350315 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || || ||||| |||||| | ||||| || || | Sbjct 349650 ATGCAGATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTAGAAGTGGAACCCTCT 349709 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | ||||| || || ||||| | || ||||| || Sbjct 349710 GATACCATCGAGAATGTTAAAGC-TAAAATACAAGATAAGGAAGGAATTCCCCCAGACCA 349768 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || || ||| ||||||| | || ||| | || ||||| Sbjct 349769 ACAGAGGTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGTACTCTTTCTGACTACAA 349828 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 349829 TATCCAGAAAGAATCTAC 349846 >seq6499 Length=11414 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || || || | || ||||| | | Sbjct 1355 ATGCAGATCTTTGTTAAGACTCTCACAGGCAAGACCATTACCTTGGAGGTTGAGCCATCA 1296 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || |||||| || |||||||| | || ||||||||| Sbjct 1295 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGATAAAGAAGGAATCCCACCAGATCAA 1236 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || ||||| || || || | | | ||| | || |||||| Sbjct 1235 CAGAGGTTGATTTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAAC 1176 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| ||||||||| | ||| | || | | ||| ||||||| Sbjct 1175 ATACAAAAGGAGTCCACACTCCATCTTGTACTTCGTTTGAGAGGAGG 1129 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || || || | ||||| || | | Sbjct 215 ATGCAGATCTTTGTAAAAACACTTACTGGCAAGACTATTACCTTGGAAGTAGAGCCTTCT 156 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | ||||||||||| | || |||||||| Sbjct 155 GACACTATTGAGAATGTGAAGGCCAAGA-TCCAAGACAAAGAAGGAATCCCACCAGATCA 97 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| || || || | | | ||| | || ||||| Sbjct 96 GCAGAGGTTGATTTTTGCAGGTAAACAGCTTGAGGATGGAAGAACTCTCTCAGACTACAA 37 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||||||||| ||||||||| | ||| Sbjct 36 CATACAAAAGGAGTCCACACTCCAT 12 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || ||||| |||||| | ||||| || || | Sbjct 1127 ATGCAGATTTTTGTGAAGACACTCACAGGTAAAACCATCACTTTAGAAGTGGAACCCTCT 1068 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| | || | | || || || || | || |||||||| Sbjct 1067 GATACCATTGAAAATGTTAAAGCTAAGA-TACAGGATAAGGAGGGAATCCCTCCAGATCA 1009 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || || || |||||| ||||||| | || ||| | || || || Sbjct 1008 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCAGACTATAA 949 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || |||||||| || | ||| |||| Sbjct 948 TATCCAGAAAGAGTCTACTCTCCATCTAGT 919 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| || || || || || ||||| || ||||| || | | Sbjct 671 ATGCAAATCTTTGTAAAAACACTTACTGGCAAGACTATCACCCTGGAAGTAGAGCCATCA 612 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | || | | ||||||||||| | || |||||||| Sbjct 611 GATACTATTGAGAATGTGAAGGCCAAGA-TCCAAGACAAAGAAGGAATTCCACCAGATCA 553 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || ||||| | | | ||| | |||||||| Sbjct 552 GCAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGAACTCTCTCTGATTACAA 493 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||||| || | ||| | || | | ||| ||||||| Sbjct 492 CATTCAAAAGGAGTCAACGCTTCATCTGGTCCTTCGATTGAGAGGAGG 445 >seq1688 Length=171348 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||||||||| || || || || || || || || | Sbjct 124488 AATATGCAGATTTTTGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTAGAGCCT 124547 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | | |||| |||| | || ||| || || ||||| | || || || Sbjct 124548 TCAGACACCATCGAAAATGTTAAGGC-TAAGATTCAGGATAAGGAAGGAATTCCTCCTGA 124606 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | ||||| ||||| || |||||| ||||||| | | | ||| || || || Sbjct 124607 CCAGCAGAGGTTAATTTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTATCTGACTA 124666 Query 23787 CAACATACAAAAAG 23800 || || || |||| Sbjct 124667 TAATATTCAGAAAG 124680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337938654108776