Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq295 109 8e-19 seq4446 105 9e-18 seq11114 104 3e-17 >seq295 Length=498498 Score = 109 bits (120), Expect = 8e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 77339 TCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC 77398 ||| || || ||| |||||| | ||| ||||||||||| ||| | | |||| || || Sbjct 330992 TCCTTTGCTTGCAGGTGATCCTTCATAAGTTTCATAAGGACCTGTTTTAGCAGCAAGCTC 331051 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 |||||| ||||| | |||||| || ||||||||||| || | || ||||| | | Sbjct 331052 ACAACTGGCTTCTAGTGCTCCATAGTAAATTGTTTCAAATAGCTGTTTATTTAATAGTCC 331111 Query 77459 TGCTTCAATACTATCAAACGGATAATGT-AAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 ||||| ||| ||||| ||| | | | | | ||||| ||| ||||| ||||| | Sbjct 331112 AGCTTCTTCACTTTCAAATGGA-AGTCTCATTTGGATAAAAAGATCAGCTAAGCCCTGTA 331170 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 ||||||||||||| || | |||| | |||| || Sbjct 331171 CTCCAATACCAATCGGGCGGTGTCGCATATTAGA 331204 Score = 109 bits (120), Expect = 8e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| ||||| || |||| |||||| || |||||||| | || ||||||||||||| | Sbjct 344713 TTATTTCCTCCTTGGTCTACATATCTTGCAGTGTTATTGAATACCCTCAACATTGGAACA 344772 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 || || || ||| ||||||| ||||||| |||| | | || | | ||||| | | Sbjct 344773 ATTCCATTTGATATTCCATTAGTTCCAGCAATAAATGTCCCTTTGGAACGAATGCAATGA 344832 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 ||| | || || || || || | || ||||| ||||| | ||||| |||| | Sbjct 344833 ATGTGCAATCCAATACCACCAGCAGTTTTGGATATGAGAGCTGTTTGCTTCAAAGTATTG 344892 Query 78333 TAGATACCCTCTATACTGTCATC 78355 || || || || ||||||||||| Sbjct 344893 TAAATGCCTTCAATACTGTCATC 344915 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 77912 AGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGG 77971 |||||| || |||||||| || |||||| |||| || || || |||| || || Sbjct 344143 AGTATAAAGTTTCTCAAATTCTTCGCCCCAAGTATCAGATAACCCCGGACATTTATGGGG 344202 Query 77972 GCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031 ||||| | ||| | ||| ||| | || |||||| |||||||||||||| Sbjct 344203 ACACATAAGGCTCCATTTTTCATTAGAAAAAACCCTTTCCATAAAAAGATCAGGTATCCA 344262 Query 78032 TAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATC 78091 || ||| ||| | ||||| | || | |||||| || || || || || || | ||| Sbjct 344263 TAATGCATAAAACAAATCTCTTGCTCGAACTTCTTCTTTCCCAGTGTTTTTCTTCAAATC 344322 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGG 78148 ||||| || | | ||| | |||||| ||||||| ||| | || | | | ||||| Sbjct 344323 AAGAAATTCTAACACATCTGCATGCCAGGGTTCTAAATAGACGGCAAAAGCACCAGG 344379 >seq4446 Length=45416 Score = 105 bits (116), Expect = 9e-18 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 47791 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC--TTGA-GACATAACTCCCA 47847 || ||||||| ||| |||| |||| |||| | | ||| | |||| ||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 47848 TTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 47907 ||| || ||||||||||| |||||| || ||||||||||||||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 47908 TTTCCATAAAATCAAATGGATTAACTGCATTATA 47941 ||||| || |||||||| || |||||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||||| ||| |||||||| |||||||||||||| || || |||||||| ||||| ||| Sbjct 5405 TTTGATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTACATCTTC 5346 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 || |||||| |||| || || || ||||||||||| |||| || Sbjct 5345 CAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 >seq11114 Length=6469 Score = 104 bits (114), Expect = 3e-17 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 78735 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCA 78794 ||||| |||| || | |||||| ||||| ||||||| ||| || ||||| ||||| ||| Sbjct 816 ATTAC--CACTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCA 873 Query 78795 GCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAA 78854 || || | |||||||| ||||| | ||||| || || || ||||||| |||||| Sbjct 874 GCGAGCAATGCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAA 933 Query 78855 ATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATT 78914 ||||||| || | || | || ||| ||| || || ||||||||||| | ||| Sbjct 934 TTATCTAATTCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATT 993 Query 78915 T 78915 | Sbjct 994 T 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694519255174080