Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4446 113 6e-20 seq11114 104 3e-17 seq295 96.9 5e-15 >seq4446 Length=45416 Score = 113 bits (124), Expect = 6e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 ||||||| ||| |||||||| |||||||| ||||| || || |||||||| ||||| ||| Sbjct 5405 TTTGATAAATCAACTTCTTCTGCTGTCCAAAATGAAGCTTCGGCTTTTTTGTACATCTTC 5346 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 || |||||| |||||| || ||||| ||||||||||| |||| || Sbjct 5345 CAAATATCATGATATTCAATGGGAAATATAACAAATCTTCTTGGGTT 5299 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 46280 TTCTTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTC--TTG-TGACATAACTCCCA 46336 || ||||||| || |||| |||| |||| | | ||| | ||| |||||| || || Sbjct 20947 TTATTTAAAAATCAGCATCCAAAGTAAAAACACTTTCTGCCTTTGATGACATCACGCCAG 20888 Query 46337 TTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396 ||| ||||||||||| || |||||| || ||||||||||||||||| | ||| |||| Sbjct 20887 CTTTCTGGTATTCACCCACTTTTTTCTCAAAGAAATTAGTTTTGCCTTCAAGTGAAATAT 20828 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATA 46430 ||||| || ||||| || || || |||| || Sbjct 20827 GCTCCATGAAGTCAAATGGGTTTGTTGCATTGTA 20794 >seq11114 Length=6469 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | |||||| ||||| ||||||| ||| || || || ||||| ||||| || | | Sbjct 823 CTGAAAACTTTTTTAGTTTCTTTGTGTAAATTTGAAACAGCAATTCTGGCAGCGAGCAAT 882 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| || ||||| | ||||| || || || ||||||| |||||| |||||||| Sbjct 883 GCATAATCTGGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCGGCTAAATTATCTAAT 942 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 || | || | ||||| ||| ||||| ||||||||||| | |||| Sbjct 943 TCAACTGTGGATACTCCAGGATAAAGCCCAGATATAACTTTCATTGTAATTT 994 >seq295 Length=498498 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 ||||| ||||| || |||| |||||| ||||||||||| | || ||||||||||||| | Sbjct 344713 TTATTTCCTCCTTGGTCTACATATCTTGCAGTGTTATTGAATACCCTCAACATTGGAACA 344772 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 || || || ||| | ||||| ||||||| |||| | | || | |||||| | | Sbjct 344773 ATTCCATTTGATATTCCATTAGTTCCAGCAATAAATGTCCCTTTGGAACGAATGCAATGA 344832 Query 76868 ATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCA 76927 || | || || || || || |||| || || ||||| | ||||| || | Sbjct 344833 ATGTGCAATCCAATACCACCAGCAGTTTTGGATATGAGAGCTGTTTGCTTCAAAGTATTG 344892 Query 76928 TAGATGCCCTCTATACTATCATC 76950 || ||||| || ||||| ||||| Sbjct 344893 TAAATGCCTTCAATACTGTCATC 344915 Score = 93.3 bits (102), Expect = 6e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| || |||||| |||| || || ||||||| || |||||||| | | Sbjct 344156 TCAAATTCTTCGCCCCAAGTATCAGATAACCCCGGACATTTATGGGGACACATAAGGCTC 344215 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | ||| ||||| || |||||| |||||||||||||||| ||| ||| Sbjct 344216 CATTTTTCATTAGAAAAAACCCTTTCCATAAAAAGATCAGGTATCCATAATGCATAAAAC 344275 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | ||||| | || | |||||| || || || || || || | ||| || || || | Sbjct 344276 AAATCTCTTGCTCGAACTTCTTCTTTCCCAGTGTTTTTCTTCAAATCAAGAAATTCTAAC 344335 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGG 76743 | ||| | |||||| ||||||| ||| | || | | |||| || Sbjct 344336 ACATCTGCATGCCAGGGTTCTAAATAGACGGCAAAAGCACCAGG 344379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| ||||| ||| |||||| | ||| ||||| |||| || || |||| || || Sbjct 330992 TCCTTTGCTTGCAGGTGATCCTTCATAAGTTTCATAAGGACCTGTTTTAGCAGCAAGCTC 331051 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTG 76053 ||||| || |||| || || || ||||||||||| || | || ||||| | || | Sbjct 331052 ACAACTGGCTTCTAGTGCTCCATAGTAAATTGTTTCAAATAGCTGTTTATTTA-ATAGTC 331110 Query 76054 C-GCTTCAAGACTATCAAAAGGATAATGT-AAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 | ||||| ||| ||||| ||| | | | | | ||||| ||| |||| ||||| Sbjct 331111 CAGCTTCTTCACTTTCAAATGGA-AGTCTCATTTGGATAAAAAGATCAGCTAAGCCCTGT 331169 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 |||||||||||||| || | |||| | |||| || Sbjct 331170 ACTCCAATACCAATCGGGCGGTGTCGCATATTAGA 331204 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 |||||||| || |||||||| ||||||||||| || ||||| | |||||||| || Sbjct 347896 GCATTAAATAAGGTAGGAGAAGCATGAGTGAAATATCCCTCAGATAAGAGATTGTAGGTA 347955 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 |||| || | || ||||| |||||| || ||||| || | ||||||||| || Sbjct 347956 GTAATAGCTTCATCAATATCTTCCCCATGAATACCAACAGCCACTCTCATCAACATGTGT 348015 Query 77120 TGAGGTCGTTCTACA 77134 || || | ||||||| Sbjct 348016 TGTGGCCTTTCTACA 348030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712780923047040