Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6499 125 5e-24 seq684 96.9 2e-15 >seq6499 Length=11414 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | ||| | || || || || || ||||||||| || ||||| || Sbjct 213 CATACCTCCTCTTAATCTAAGGACAAGATGGAGGGTTGACTCCTTTTGAATATTGTAGTC 272 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | |||| || | || || |||||||| || || |||||||| | ||||||||||| Sbjct 273 TGAGAGTGTACGTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGG 332 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||||||| ||| |||||| || | || | || ||||| | | || Sbjct 333 AGGAATACCTTCCTTATCCTGTATCTTAGCTTTTACATTTTCGATTGTGTCAGACGGCTC 392 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| || || ||||| || ||||| || || || |||||||||||| Sbjct 393 CACTTCCAGGGTTATGGTCTTACCAGTGAGTGTTTTAACAAAGATTTGCATG 444 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| || | ||||| |||||||| ||||||||| |||||||| Sbjct 438 TTGCATGCCTCCTCTCAATCGAAGGACCAGATGAAGCGTTGACTCCTTTTGAATGTTGTA 497 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | | || || |||||||| || || |||||||| | ||||||||| Sbjct 498 ATCAGAGAGAGTTCTTCCATCTTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATC 557 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || || ||||| ||||| | | || || || | | Sbjct 558 TGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATAGTATCTGATGG 617 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| || || || || || || ||||||||||| Sbjct 618 CTCTACTTCCAGGGTGATAGTCTTGCCAGTAAGTGTTTTTACAAAGATTTGCAT 671 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| || | || |||||||| || || || || ||||| || Sbjct 666 TTGCATACCACCTCTCAACCTAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATA 725 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| || |||| || | |||||| || |||||||||| | ||||||||| Sbjct 726 GTCAGAGAGAGTACGGCCGTCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATC 785 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 || ||| | |||||| || ||| ||||| ||| |||| || | || || || | | Sbjct 786 TGGAGGAATACCTTCTTTATCCTGAATCTT-TGCTTTCACATTTTCAATCGTATCAGATG 844 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | || || |||||||| ||||| || || || ||||| |||||| Sbjct 845 GCTCGACTTCTAAGGTGATGGTCTTTCCTGTGAGAGTTTTGACAAAGATCTGCATG 900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||||||||| |||||||| || | ||| | | || || Sbjct 7 ACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTCTGAGAGAGTTCTTCCATCCTCA 66 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || ||||| ||||| | ||||||||||| || | ||||| || || Sbjct 67 AGCTGTTTACCTGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGG 126 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | | || || |||| ||||| ||||| Sbjct 127 ATCTTGGCCTTCACATTCTCAATAGTGTCAGAAGGCTCTACTTCCAAGGTAATAGTCTTG 186 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || ||||| ||||| Sbjct 187 CCAGTAAGTGTTTTTACAAAGATCTGCAT 215 >seq684 Length=498857 Score = 96.9 bits (106), Expect = 2e-15 Identities = 174/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||||||||| | || || ||||| || || |||||||| || || || Sbjct 348512 CATACCCCCTCTCAGTCTAAGGACAAGATGAAGAGTAGATTCTTTTTGGATATTATAGTC 348453 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | | ||| || | || || |||||||| || ||||| ||||| | || || ||| Sbjct 348452 AGACAACGTT--CGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGTTGGTCT 348395 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | ||||| || ||| ||||| || | || ||| | ||||| || | || Sbjct 348394 GGAGGGATTCCTTCTTTGTCCTGGATCTT-AGCCTTAACATTCTCAATGGTATCAGAGGG 348336 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 ||||| |||| || || ||||| || || | || ||||| ||||| ||||| | | Sbjct 348335 CTCCACTTCCAAGGTGATGGTCTTGCCAGTTAATGTTTTCACAAAGATCTGCATTTTTTA 348276 Query 44344 AATGAAAATA 44353 |||||||| Sbjct 348275 CCTGAAAATA 348266 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | | || || || || ||| ||||||||| |||||||| || Sbjct 349652 CATACCTCCTCTCAAACGAAGTACAAGATGGAGTGTGGACTCCTTTTGTATGTTGTAGTC 349593 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || || ||||| || || |||||||| | | ||||||||||| Sbjct 349592 TGAGAGAGTTCTTCCATCCTCAAGCTGTTTACCTGCAAAGATTAGCCTCTGCTGATCTGG 349533 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| || || ||| | || | || || || | | || Sbjct 349532 TGGAATTCCTTCTTTATCCTGAATTTTAGCCTTGACATTTTCAATCGTATCTGATGGCTC 349473 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| ||||| || ||||| || || || ||||| ||||| Sbjct 349472 AACCTCCAAGGTAATGGTCTTGCCTGTGAGAGTTTTAACAAAGATCTGCAT 349422 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| ||||| ||||| || || | ||| || | || || |||||||| || ||||| Sbjct 350297 CTCTTTTTGAATGTTATAGTCAGAGAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAA 350238 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| | ||||||||||| || | ||||| || || ||||| || | | Sbjct 350237 GATCAACCTCTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTTACATT 350178 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||| | | || || |||| || || ||||| || || || ||||| || Sbjct 350177 TTCGATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAAC 350118 Query 44326 GAAGATTTGCAT 44337 ||||| ||||| Sbjct 350117 AAAGATCTGCAT 350106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || || | || ||||| || || || || ||||| ||||| || Sbjct 350108 CATACCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTC 350049 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || |||| ||||| || ||||||||||| | ||| || |||| Sbjct 350048 TGAAAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGG 349989 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||| || ||| || ||| ||| | || | || || || | | || Sbjct 349988 GGGGATACCTTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGATGGCTC 349929 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || ||||| || || || ||||| |||||||| ||||| Sbjct 349928 AACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 349878 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || || | || ||||| || || || || ||||| ||||| || Sbjct 349880 CATACCGCCTCTGAGCCTAAGAACAAGGTGGAGAGTAGATTCTTTCTGGATATTGTAGTC 349821 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || |||| ||||| || ||||||||||| | ||| || |||| Sbjct 349820 AGAAAGAGTACGGCCATCTTCCAATTGCTTACCAGCAAAGATCAACCTCTGTTGGTCTGG 349761 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || ||| || |||| || ||| | ||||| || | || || Sbjct 349760 GGGAATTCCTTCCTTATCTTGTAT-TTTAGCTTTAACATTCTCGATGGTATCAGAGGGTT 349702 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | || || || || || || || || ||||| || || ||||| Sbjct 349701 CCACTTCTAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATCTGCAT 349650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359914840489974