Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1159 324 1e-83 >seq1159 Length=103958 Score = 324 bits (358), Expect = 1e-83 Identities = 614/893 (69%), Gaps = 12/893 (1%) Strand=Plus/Plus Query 16658 TGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCC 16717 ||| ||||||| | ||||||| || | ||| ||| || || || ||||| || Sbjct 49817 TGAGCAACACCAGCTTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCA 49876 Query 16718 TCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGT 16775 || ||||||| | ||| |||||||| |||||||| | || | | ||||| | Sbjct 49877 TCATCAGATATAAGATTCATAAAATCAAATGGATTAGTTGAATTGTATA-ATTTTTCACA 49935 Query 16776 ACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGC 16835 ||| ||||| | | ||| | ||| || ||||| || || || || ||||||| | || Sbjct 49936 ACCA-AGTTCAGTTAATAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGC 49994 Query 16836 AGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAA 16895 | ||||| || || | || ||||||||||| || || |||||| || || || ||| Sbjct 49995 AATTCATCCCGATTAAACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAA 50054 Query 16896 CCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA 16955 |||| || ||||||||| | | ||||||| ||||| | || |||||| | ||| Sbjct 50055 CCGCATCGCGAATAATACTCGTTATACGTTCCTTTGACGGCTTTTGAATAAGATATGTAA 50114 Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| | ||| || || ||| ||||||| || || || | || | ||| ||||||| Sbjct 50115 ACAATAAACAAGCAAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAA 50174 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || |||||||| || || || || |||||||| || || || || || | Sbjct 50175 ACGTTAAACCGGGCATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCG 50234 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||||| |||||||| |||| ||||| || | ||| ||||| | | ||||||| || Sbjct 50235 AAAAGAAAATACCCTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTT 50294 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | ||| |||||| || |||| || ||||| | || | ||| | |||||| | Sbjct 50295 TACTACTAATCCAATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGA 50354 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 |||| |||||||| ||||||| | | | || ||||| || || || | | || Sbjct 50355 TGGCGTTAAATAAAAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGC 50414 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 |||||||||| ||||| || || || || || || ||||| |||||||| || || |||| Sbjct 50415 TGTACATTTCAGAGTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTT 50474 Query 17316 CCGCTATTTGAACTTC--CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 ||| || |||||||| || || || ||||| ||| ||||||||| || || || || Sbjct 50475 CCGTTACCTGAACTTCTTGAC-TA-AAACGTTCAACTAAATTTTCGTTTACAATTCCATC 50532 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT--CCGGTGTAAGA 17431 || || ||||| || || | ||| || |||| ||||| |||| ||| Sbjct 50533 AGAAGCAGCAAAAAAGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGT-TAA-T 50590 Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 |||| | || | |||||| || | ||| |||||||| | ||||||||| ||| Sbjct 50591 GTTTGCCAATGATTGAGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCT 50650 Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAAC 17544 | |||| ||| || | |||||||||| || | ||||| || || || Sbjct 50651 TCCGCCTGTTTGTATTTCGCCCAAATATCAGGATACTCAATGGGAAAAACGAC 50703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517499816622360