Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1159 315 7e-81 >seq1159 Length=103958 Score = 315 bits (348), Expect = 7e-81 Identities = 608/890 (68%), Gaps = 8/890 (1%) Strand=Plus/Plus Query 15898 AGCAACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTC 15957 ||||||||| | ||||||| || | ||| ||| || ||||| ||||| || || Sbjct 49819 AGCAACACCAGCTTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATC 49878 Query 15958 TAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTAC 16015 ||||||| | |||||||||||| |||||||| | || | | || || | || Sbjct 49879 ATCAGATATAAGATTCATAAAATCAAATGGATTAGTTGAATTGTATA-ATTTTTCACAAC 49937 Query 16016 CCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAA 16075 | ||||| || | ||| | ||| || ||||| || || || || ||||||| | |||| Sbjct 49938 CA-AGTTCAGTTAATAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAA 49996 Query 16076 TTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACC 16135 || || || || | | ||||||||||| | |||||||||| ||||| || ||||| Sbjct 49997 TTCATCCCGATTAAACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACC 50056 Query 16136 GCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAAC 16195 || || ||| ||| || ||| | ||||| | || | || | | ||||| Sbjct 50057 GCATCGCGAATAATACTCGTTATACGTTCCTTTGACGGCTTTTGAATAAGATATGTAAAC 50116 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 | || ||| || || ||| |||||| ||||| || | || | ||| || ||||| Sbjct 50117 AATAAACAAGCAAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAAC 50176 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 ||||| || |||||| || || || || ||||| || || || ||||| |||||| Sbjct 50177 GTTAAACCGGGCATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAA 50236 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 ||||| ||||||||||| | |||||||| | ||| |||||| | | || || | |||| Sbjct 50237 AAGAAAATACCCTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTA 50296 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 ||| |||||| || |||| || ||||| | ||| | |||| | |||||| ||| Sbjct 50297 CTACTAATCCAATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATG 50356 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || ||||| || ||||||| | ||| ||||| || ||||| | | ||| Sbjct 50357 GCGTTAAATAAAAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTG 50416 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| ||||| || || || || || || ||||| || || || || || || ||| Sbjct 50417 TACATTTCAGAGTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCC 50476 Query 16556 GCTATTTGTACTTC--CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | || || ||||| || ||||| ||||| | | || || || || || || ||| Sbjct 50477 GTTACCTGAACTTCTTGAC-TAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAG 50534 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 ||||||||||| || || | || || |||| ||||| | || | | | Sbjct 50535 AAGCAGCAAAAAAGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTT 50594 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 |||||| || | |||||| || | ||| |||||||| | |||||||| ||| | | Sbjct 50595 GCCAATGATTGAGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCG 50654 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACG 16783 ||| ||| || | |||||||||| || | |||||||| |||||| Sbjct 50655 CCTGTTTGTATTTCGCCCAAATATCAGGATACTCAATGGGAAAAACGACG 50704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511369159003640