Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq295 111 1e-19 >seq295 Length=373786 Score = 111 bits (122), Expect = 1e-19 Identities = 388/598 (65%), Gaps = 16/598 (3%) Strand=Plus/Plus Query 18548 CGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCG 18607 |||||| |||||| | || || || ||||||||||| ||| || ||| | | Sbjct 5215 CGATCGTACAGGAGTTGGTACATTTGCTTTATTTGGAGCCCAAATGCGTTACTCCCTTCA 5274 Query 18608 AAATGA---ATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGA 18664 || | ||||||| | ||||| ||||| || ||||||||| | | || || ||||| Sbjct 5275 CAACAACATATTTCCTTTATTAACAACAAAACGCGTTTTTTGGCGCGGTGTAGTTGAAGA 5334 Query 18665 GTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACA 18724 | |||||||| || | ||| ||| | | ||||| | || ||| || | | Sbjct 5335 ACTTTTATGGTTCATTAGAGGGAGTACCAACGCTAAAGATTTAGCAAAGAAAAATGTGAA 5394 Query 18725 CATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACA 18784 || ||| || || | | || ||| | || | | ||| || | | | | Sbjct 5395 TATTTGGAATCCCAACAGCACCAGGGAATATTTAGACTCAATTGGTTTAACTGATCGTGA 5454 Query 18785 CACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAA 18844 || || | || || ||||| || || || |||||||||| |||||| |||||| Sbjct 5455 AGAAGGCGATTTGGGACCTATTTATGGTTTTCAATGGAGACATTATGGAGCTGAATATG- 5513 Query 18845 AGACTGTCA-AT-CAAACT-ATT-TAC--AGCAAGGAATCGATCAGCTGCAAACTGTTAT 18898 || | || || ||| ||| ||| | |||| || ||||| | |||||| Sbjct 5514 -----GTAATATGCACACTGATTATACTAATAAAGGTATTGATCAATTAATGGATGTTAT 5568 Query 18899 AGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAA 18958 |||| ||||||| || ||| ||| | || ||||| | ||||||| || | Sbjct 5569 TAATACTATTAAAAATAAACCAACTGATCGAAGGATAATTATGTGTGCTTGGAACCCCAT 5628 Query 18959 GGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAA 19018 |||||||| ||||| | ||||||| ||||| ||| ||| ||||| || || | Sbjct 5629 TGATATCCCTAAAATGGCATTACCTCCTTGTCATTGTTTAGTTCAATTTTATGTAGCCGA 5688 Query 19019 CGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTT 19078 || ||| | || || | |||| || | || | ||||||||| ||||| || || || Sbjct 5689 AGGAGAACTTTCTTGTTTATTATATCAACGTTCAGCGGATATGGGTCTTGGAGTTCCTTT 5748 Query 19079 CAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 || || || | ||||| | ||||| || || | || |||||||||||| ||||| Sbjct 5749 TAATATCGCCAGTTATGCTTTACTTACTTATATGATTGCTCATGTTACAGGA-TTAAA 5805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399469542405465