Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq569 105 6e-18 seq241 96.9 3e-15 >seq569 Length=200630 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | || || |||||||| ||| ||| |||||| | Sbjct 134392 AATGCAAATTTTCGTGAAAACCCTAACCGGTAAAACCATCACCCTCGAGGTTGAACCCTC 134451 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| |||||| || || || ||| | || |||||| Sbjct 134452 CGATACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAGGGTATCCCACCAGATCA 134511 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | ||||| || || ||||||||||||||| ||| | |||| ||||| Sbjct 134512 ACAACGTTTAATCTTCGCTGGTAAACAACTGGAAGATGGACGCACTCTTTCCGACTACAA 134571 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| |||||||| || |||||| ||||||| || Sbjct 134572 CATTCAAAAGGAATCGACGCTTCACTTGGTGTTGCG 134607 >seq241 Length=949647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| ||||||| ||||| || || || ||||| ||| || || | Sbjct 165821 AATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACTATTACATTGGAAGTTGAGCCATC 165880 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| || ||| ||||| ||||| | || |||||| Sbjct 165881 CGACACCATAGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCA 165940 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || |||||| |||||||| ||| | | |||||||| Sbjct 165941 ACAACGTTTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACTCTTTCTGATTACAA 166000 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || |||||||| |||||||| |||| || |||| |||| || Sbjct 166001 TATCCAAAAGGAATCAACTCTTCATTTGGTATTGAGATTGAGAGGTGG 166048 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || ||||||| ||||| || ||||| ||||| ||| || || | Sbjct 166961 AATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATTACTTTAGAAGTTGAGCCATC 167020 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| ||||| ||||| ||||| | || |||||| Sbjct 167021 TGATACCATTGAAAATGTTAAAGCTAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCA 167080 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | ||||| || || |||||||| |||||| ||| | | |||||||| Sbjct 167081 ACAACGTTTAATCTTCGCCGGTAAACAACTTGAAGATGGGCGCACTCTTTCTGATTACAA 167140 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || |||||||||||||| ||| |||| || |||| |||| || Sbjct 167141 TATCCAAAAGGAATCTACTCTCCACTTGGTATTGAGATTGAGAGGTGG 167188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || ||||||||||||| || ||||| ||||| ||| || || | Sbjct 166049 AATGCAGATCTTTGTCAAAACATTGACTGGAAAAACTATTACTTTGGAAGTTGAGCCATC 166108 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| ||||| ||||||||||| | || |||||| Sbjct 166109 TGATACCATTGAAAATGTTAAAGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGATCA 166168 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| || | |||||||| || |||||| | ||||| ||| | | |||||||| Sbjct 166169 ACAACGATTAATCTTTGCTGGTAAACAATTAGAAGACGGACGCACTCTTTCTGATTACAA 166228 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| || || || ||||||| |||| ||||||| Sbjct 166229 CATCCAAAAAGAATCAACCCTCCATTTGGTGTTGAGATTGAGAGGAGG 166276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428299055618435