Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq569 147 2e-30 seq1159 138 1e-27 seq241 102 8e-17 seq412 91.5 2e-13 >seq569 Length=200630 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| || || || |||||||||||| |||| || ||| || | Sbjct 134392 AATGCAAATTTTCGTGAAAACCCTAACCGGTAAAACCATCACCCTCGAGGTTGAACCCTC 134451 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | ||| |||||| |||||| | ||||| ||||| ||||| | || || Sbjct 134452 CGATACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAGGGTATCCCACCAGATCA 134511 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || ||||| ||||| || | ||||| || ||||||||| Sbjct 134512 ACAACGTTTAATCTTCGCTGGTAAACAACTGGAAGATGGACGCACTCTTTCCGACTACAA 134571 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || ||||| | ||||| || | |||||||| Sbjct 134572 CATTCAAAAGGAATCGACGCTTCACTTGGTGTTGCG 134607 >seq1159 Length=103958 Score = 138 bits (152), Expect = 1e-27 Identities = 401/615 (65%), Gaps = 2/615 (0%) Strand=Plus/Minus Query 116585 CTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGC 116644 || || || || || | || ||||| |||| ||||| | || || || || ||| Sbjct 50727 CTTCGTGATAATCCAAGACGTTTCGTCGTTTTTCCCATTGAGTATCCTGATATTTGGGCG 50668 Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGA- 116703 | |||||| |||| || || || || |||||| || || || || || || || || Sbjct 50667 AAATACAAACAGGCGGAAGCTTCATTTTGGACCACTGAAGAAGTAGATCTTTCGAAAGAT 50608 Query 116704 CACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | | | | | ||| | || | ||| ||||| || ||||| ||| || || | || Sbjct 50607 CTCAATC-ATTGGCAAACATTAACCGATAACGAACGTCATTTTATCTCCCATGTTTTAGC 50549 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 |||||| || || || || || || ||||| ||| | || || ||||| ||| || Sbjct 50548 CTTTTTTGCTGCTTCTGATGGAATTGTAAACGAAAATTTAGTTGAACGTTTTAGTCAAGA 50489 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883 || ||||| | || || || || || ||||| ||||| || || || || || | || Sbjct 50488 AGTTCAGGTAACGGAAGCACGTTGTTTTTACGGTTTTCAAATTGCTATTGAAAATATTCA 50429 Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCG 116943 ||| |||||||| | | || || || || | | | | | || Sbjct 50428 CTCTGAAATGTACAGCATGTTAATTGAAACTTATATTTCTGATCCAAAACAAAAAGAATT 50369 Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 ||| || ||||||||||| ||| | || || || ||| |||| || || ||||| | Sbjct 50368 TTTATTTAACGCCATCGAAACGCTTCCTTGTGTTAAAAAGAAAGCTGATTGGGCTTTAAA 50309 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| | | | | || | || || || || | || || || |||||||| || Sbjct 50308 TTGGATTAGTAGTAAAAACGCGACTTTTGGGGAACGTTTAGTTGCTTTTGCGGCCGTTGA 50249 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| | ||||||||||| ||||| || || || |||||| | || || || || | || Sbjct 50248 GGGTATTTTCTTTTCGGGAAGTTTTGCAGCTATTTTTTGGTTGAAAAAGCGGGGTTTAAT 50189 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 |||||| | || || || || | || || | || || ||| | |||| ||| || Sbjct 50188 GCCCGGTTTAACGTTTTCTAATGAATTAATTTCGCGCGATGAAGGTTTACATTACGAATT 50129 Query 117184 TGCCTGTTTGCTGTT 117198 ||| ||||| |||| Sbjct 50128 TGCTTGTTTATTGTT 50114 >seq241 Length=949647 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| ||||| | || || ||||||||||| | || |||| ||||| | Sbjct 165594 ATGCAGATTTTCGTGAAAACCTTGACTGGTAAAACCATCACGTTAGAGGTCG-AGCCATC 165652 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||||| | ||||||||||| ||||| | ||||| Sbjct 165653 TGACACTATTGAAAATGTGAAGGCGAAAATCCAGGACAAAGAGGGGATCCCACCAGACCA 165712 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || ||||| | || || | || ||||| ||| ||||| Sbjct 165713 ACAACGGTTGATCTTTGCCGGAAAACAATTAGAAGATGGACGTACCCTTTCCGATTACAA 165772 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| | || || || | || ||| | |||||||| || Sbjct 165773 TATCCAAAAGGAATCAACTCTCCACTTGGTATTGAGATTGAGGGGTGG 165820 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || | || || ||||||||||| | || |||||| | | Sbjct 166277 AATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACCATCACATTGGAAGTCGAACCATC 166336 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | ||| | || | || || | || || || || ||||| | || || Sbjct 166337 CGACACCATTGAAAATGTTAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCA 166396 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || ||||| | || || | |||||| || || ||||| Sbjct 166397 ACAACGATTAATCTTTGCTGGTAAACAATTAGAAGATGGGCGCACTCTTTCTGATTACAA 166456 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| || ||| |||| ||| | ||||| || || Sbjct 166457 CATCCAGAAAGAATCCACCCTTCATTTAGTATTGAGATTGAGAGGAGG 166504 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || | || || ||||||||||| | || |||||| | | Sbjct 166505 AATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACCATCACATTGGAAGTCGAACCTTC 166564 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | || ||||| | || | ||||| | || ||||| || ||||| | |||| Sbjct 166565 TGATACTATTGAAAACG-TTAAAGCTAAAATCCAGGATAAAGAAGGGATCCCACCAGACC 166623 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | |||| ||| || ||||| || || || | || || || || || | Sbjct 166624 AACAACGTTTAATCTTCGCCGGTAAACAACTTGAAGATGGACGTACTCTTTCGGATTATA 166683 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| || || |||| || ||| |||||||| | ||| | || || Sbjct 166684 ACATCCAAAAAGAATCCACCCTCCATTTAGTGTTGAGATTGCGAGGTGG 166732 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| | || || |||||||||||| | || || ||| | | Sbjct 167645 AATGCAAATCTTCGTAAAAACATTAACTGGAAAAACCATCACCTTAGAAGTGGAACCTTC 167704 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | || | ||||| | ||||| || || ||||| | || || Sbjct 167705 TGATACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 167764 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | ||| || ||||| |||| || | || ||||| || ||||| Sbjct 167765 ACAGCGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGACGTACCCTTTCAGATTACAA 167824 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| |||| |||||| |||| Sbjct 167825 TATCCAAAAGGAATCCACTCTGCATTTAGT 167854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| | || || |||||||||||| | || || ||| | | Sbjct 167417 AATGCAAATCTTCGTAAAAACATTAACTGGAAAAACCATCACCCTAGAAGTGGAACCTTC 167476 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | || | ||||| | ||||| || || ||||| | || || Sbjct 167477 TGATACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 167536 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || ||||| | || || | || || || || ||||| Sbjct 167537 ACAACGTTTAATCTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 167596 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || || || | || || ||| |||| ||| | || || || || Sbjct 167597 CATTCAAAAAGAATCAACCCTCCATTTAGTATTGAGGTTAAGAGGTGG 167644 >seq412 Length=275653 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| | || ||||| ||||| || | || ||||| | Sbjct 82785 AAATATGCAGATCTTTGTTAAAACTTTAACTGGCAAGACCATAACTCTTGAGGTCGAGCC 82844 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | ||| |||||| || || | ||||||||||| ||||| |||| Sbjct 82845 TTCCGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCGGA 82904 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || || || | || | |||||| ||||| || || || | |||||| || || || Sbjct 82905 TCAACAGCGTTTAATTTTCGCGGGAAAACAACTCGAAGATGGGCGCACTCTTTCTGATTA 82964 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| || | ||| ||||| |||| Sbjct 82965 TAATATTCAGAAAGAATCAACGTTGCATTTAGT 82997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515173622421520