Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq295 210 3e-49 seq241 141 1e-28 seq412 113 7e-20 >seq295 Length=373786 Score = 210 bits (232), Expect = 3e-49 Identities = 378/546 (69%), Gaps = 15/546 (3%) Strand=Plus/Minus Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478 ||||||| |||| ||||| || | ||| |||||||||||||| | |||| ||| Sbjct 5819 AATAAAT--ATATACCTTTAATCCTGTAACATGAGCAATCATATAAGTAAGTAAAGCATA 5762 Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538 ||| || | |||||| || || || | ||||||||| ||||| | |||||| | | ||| Sbjct 5761 ACTGGCGATATTAAAAGGAACTCCAAGACCCATATCCGCTGAACGTTGATATAATAAACA 5702 Query 205539 TGTAAGATATTTATTATTAAT-TACATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597 | ||| || | || ||||| |||||| || |||||||||||||| |||| Sbjct 5701 AGAAAG----TTCTCCTTCGGCTACATAAAATTGAACTAAACAATGACAAGGAGGTAATG 5646 Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAG--- 205654 |||| || | ||| || || ||||| || | ||||| ||| | |||| Sbjct 5645 CCATTTTAGGGATATCAATGGGGTTCCAAGCACACATAATTATCCTTCGA---TCAGTTG 5589 Query 205655 GtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAAT 205714 |||||||||| || |||| |||| || |||||||||||| |||| ||| ||||||| Sbjct 5588 GTTTATTTTTAATAGTATTAATAACATCCATTAATTGATCAATACCTTTATTAGTATAAT 5529 Query 205715 TTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGAC 205774 || | ||||| | ||||| ||| ||| |||| | ||||||||||||||||| || | Sbjct 5528 CAGTGTGCATATTACCATATTCAGCTCCATAATGTCTCCATTGAAAACCATAAATAGGTC 5469 Query 205775 CTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccat 205834 | ||||| ||||||| | |||| | |||||| | | || ||||| | | | Sbjct 5468 CCAAATCGCCTTCTTCACGATCAGTTAAACCAATTGAGTCTAAATATTCCCTGGTGCTGT 5409 Query 205835 tttcatcccaaatatggattcctttattttttaGAATATTT-GTATTAGTTGATCCAGAT 205893 | || |||||||| | ||| ||| || ||| ||| | || || || Sbjct 5408 TGGGATTCCAAATATTCACATTTTTCTTTGCTA-AATCTTTAGCGTTGGTACTCCCTCTA 5350 Query 205894 ATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAAT 205953 || |||||||| | ||||||||| | || | |||||| | ||||||||| ||||| Sbjct 5349 ATGAACCATAAAAGTTCTTCAACTACACCGCGCCAAAAAACGCGTTTTGTTGTTAATAAA 5290 Query 205954 GGAAAT 205959 |||||| Sbjct 5289 GGAAAT 5284 >seq241 Length=949647 Score = 141 bits (156), Expect = 1e-28 Identities = 181/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| ||| |||| || ||||| || || |||| | ||| | Sbjct 167417 AATGCAAATCTTCGTAAAAACATTAACTGGAAAAACCATCACCCTAGAAGTGGAACCTTC 167476 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||||| ||||| || ||||| || ||||| ||||| Sbjct 167477 TGATACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 167536 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || ||||||||||| ||| |||| || | ||||| || Sbjct 167537 ACAACGTTTAATCTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 167596 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||||||||||||||||| | ||||| || || | ||| ||||||| || ||| || Sbjct 167597 CATTCAAAAAGAATCAACCCTCCATTTAGTATTGAGGTTAAGAGGTGGAATGCAAATCTT 167656 Query 124777 CATAAAAA 124784 | |||||| Sbjct 167657 CGTAAAAA 167664 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||| | || || |||||||| ||| | || |||| || Sbjct 166049 AATGCAGATCTTTGTCAAAACATTGACTGGAAAAACTATTACTTTGGAAGTTGAGCCATC 166108 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||||| || ||||||||||| || || || ||||| Sbjct 166109 TGATACCATTGAAAATGTTAAAGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGATCA 166168 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || ||||||||||| || | || || | ||||| || Sbjct 166169 ACAACGATTAATCTTTGCTGGTAAACAATTAGAAGACGGACGCACTCTTTCTGATTACAA 166228 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || |||||||||||||| | |||||||| || | || |||| || || ||| || Sbjct 166229 CATCCAAAAAGAATCAACCCTCCATTTGGTGTTGAGATTGAGAGGAGGAATGCAAATTT 166287 Score = 120 bits (132), Expect = 5e-22 Identities = 176/248 (71%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || | || || |||||||| || | || |||| || Sbjct 167189 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTTGAGCCATC 167248 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||||| ||||| || ||||| || ||||| ||||| Sbjct 167249 TGATACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 167308 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || |||||| | || ||| |||| || | ||||| || Sbjct 167309 ACAACGTTTGATCTTCGCCGGTAAACAACTTGAAGATGGTCGTACTCTTTCTGATTACAA 167368 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || |||||||||||||| | ||||| || || | ||| ||||||| || ||| || Sbjct 167369 CATCCAAAAAGAATCAACCCTCCATTTAGTATTGAGGTTAAGAGGTGGAATGCAAATCTT 167428 Query 124777 CATAAAAA 124784 | |||||| Sbjct 167429 CGTAAAAA 167436 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| |||| || ||||| || || | || ||||| | | Sbjct 166734 ATGCAAATTTTTGTTAAGACCTTAACCGGTAAAACCATCACCTTGGAAGTTGAACCTTCT 166793 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| || || || ||||||||||| || || || |||||| Sbjct 166794 GATACAATTGAAAATGTTAAAGCTAAGATCCAGGATAAAGAAGGAATTCCTCCAGATCAA 166853 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||| | || ||| | || || | || || || Sbjct 166854 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGATGGGCGTACTCTTTCTGACTACAAC 166913 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||||||| | ||||| || || | || ||||||| || Sbjct 166914 ATCCAAAAAGAATCAACTCTCCATTTAGTATTGAGATTGAGAGGTGGAAT 166963 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| |||| || ||||| || || | || | ||| | Sbjct 166505 AATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACCATCACATTGGAAGTCGAACCTTC 166564 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| || | ||| ||||| || ||||||||||| || ||||| || || Sbjct 166565 TGATACTATTGAAAACGTTAAAGCTAAAATCCAGGATAAAGAAGGGATCCCACCAGACCA 166624 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || |||||| | || ||| | || || | |||||||| Sbjct 166625 ACAACGTTTAATCTTCGCCGGTAAACAACTTGAAGATGGACGTACTCTTTCGGATTATAA 166684 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || | ||||| || || | || ||||||||||| ||| || Sbjct 166685 CATCCAAAAAGAATCCACCCTCCATTTAGTGTTGAGATTGCGAGGTGGTATGCAAATTT 166743 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| ||||| || ||||| ||||||||| | | || ||||| |||||| Sbjct 165906 AAGATTCAAGATAAGGAAGGAATCCCACCAGATCAACAACGTTTGATCTTTGCTGGAAAA 165965 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| | || || | ||||| ||||| ||||| ||||||||| | ||| Sbjct 165966 CAATTGGAAGATGGACGTACTCTTTCTGATTACAATATCCAAAAGGAATCAACTCTTCAT 166025 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || | || ||||||| || Sbjct 166026 TTGGTATTGAGATTGAGAGGTGGAAT 166051 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || || ||||| | || || | Sbjct 165594 ATGCAGATTTTCGTGAAAACCTTGACTGGTAAAACCATCACGTTAGAGGTCGAGCCATCT 165653 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||| || || ||||| || || ||||| || ||| Sbjct 165654 GACACTATTGAAAATGTGAAGGCGAAAATCCAGGACAAAGAGGGGATCCCACCAGACCAA 165713 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| || | || ||||| |||||||||||||| ||| | || || | ||||| ||| Sbjct 165714 CAACGGTTGATCTTTGCCGGAAAACAATTAGAAGATGGACGTACCCTTTCCGATTACAAT 165773 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||||||| | || ||||| || | || | ||||| || Sbjct 165774 ATCCAAAAGGAATCAACTCTCCACTTGGTATTGAGATTGAGGGGTGGAAT 165823 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| |||| || ||||| || || | || | ||| || Sbjct 166277 AATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACCATCACATTGGAAGTCGAACCATC 166336 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || || |||||||| ||||| || ||||| ||||| Sbjct 166337 CGACACCATTGAAAATGTTAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCA 166396 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || ||||||||||| ||| | || || | ||||| || Sbjct 166397 ACAACGATTAATCTTTGCTGGTAAACAATTAGAAGATGGGCGCACTCTTTCTGATTACAA 166456 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||| || | ||||| || || | || |||| || || ||| || Sbjct 166457 CATCCAGAAAGAATCCACCCTTCATTTAGTATTGAGATTGAGAGGAGGAATGCAAATTT 166515 >seq412 Length=275653 Score = 113 bits (124), Expect = 7e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || |||| ||||| || |||||| | ||| | || | Sbjct 82789 ATGCAGATCTTTGTTAAAACTTTAACTGGCAAGACCATAACTCTTGAGGTCGAGCCTTCC 82848 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || || ||||| ||||| || || ||||| |||||| Sbjct 82849 GATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCGGATCAA 82908 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||||||| | || ||| | || || | ||||||||| Sbjct 82909 CAGCGTTTAATTTTCGCGGGAAAACAACTCGAAGATGGGCGCACTCTTTCTGATTATAAT 82968 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||||||||| |||||||| || || | || || ||||| Sbjct 82969 ATTCAGAAAGAATCAACGTTGCATTTAGTCCTAAGATTGCGTGGTGG 83015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755389170473600