Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq569 98.7 1e-15 seq135 98.7 1e-15 seq1159 93.3 5e-14 seq241 93.3 5e-14 seq553 89.7 6e-13 seq3 89.7 6e-13 seq531 87.8 2e-12 seq225 86.0 7e-12 seq893 84.2 3e-11 seq175 84.2 3e-11 seq17 84.2 3e-11 >seq569 Length=200630 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || ||||||||||| ||||| || | ||||| || | Sbjct 134608 ACGCAACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGTCC 134549 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || ||||||||||| || | || || || || | || | | |||||| Sbjct 134548 ATCTTCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGGATACCCTCCTT 134489 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||||||| |||| | | | || ||| | ||| || |||| ||||| Sbjct 134488 GTCTTGGATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAACCTCGAGGGTGAT 134429 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||| || ||||| || || || || ||||||||| Sbjct 134428 GGTTTTACCGGTTAGGGTTTTCACGAAAATTTGCATT 134392 >seq135 Length=268754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 199435 AAAAATTATCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 199376 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 199375 TCACCACTATACTA 199362 >seq1159 Length=103958 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 68745 AAAAAGATTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 68686 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 68685 TCACCACTATACTA 68672 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 62391 AAAAAAATTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 62332 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 62331 TTACCACTATACTA 62318 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 |||||||| |||||| |||| | | ||||||||||||| ||||||||||||||| Sbjct 59100 TTAACGTTACAAAAAAAT---CTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGAC 59044 Query 60105 AGGCGGACATACTCACCACTATACTA 60130 |||||| ||||| |||||||||||| Sbjct 59043 AGGCGGGGATACTGACCACTATACTA 59018 >seq241 Length=949647 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || | ||| || ||||| | ||| || || || || |||||||||| Sbjct 166505 TCCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGA 166446 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| ||| | || |||| || |||||||| || || | ||| || || || | || Sbjct 166445 AAGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGTGG 166386 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || ||| || ||| | | | | |||||| | ||| || Sbjct 166385 GATTCCTTCCTTATCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTTCGAC 166326 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || |||| ||||| ||||| ||||||||| Sbjct 166325 TTCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCATT 166277 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||||||| | ||| || ||||| | || || |||||||| |||||||||| Sbjct 167645 TCCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGA 167586 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || |||| || ||||| ||||| || | || || || || | || Sbjct 167585 AAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGG 167526 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| |||||| ||| | | | | || || | |||||| Sbjct 167525 GATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCAC 167466 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || |||| || ||||| |||||||||||| Sbjct 167465 TTCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCATT 167417 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 || ||||||| ||| |||||||| ||||||||||| | || || || | || || Sbjct 167854 ACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAAAGGGTACGTCCATCTTCC 167795 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | || ||||||||||| || | ||||| || || | || | | |||||||| | Sbjct 167794 AATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 167735 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| ||| | | | | || || | |||||| || | ||||||||||| Sbjct 167734 ATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACTTCTAAGGTGATGGTTTTT 167675 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || |||| || ||||| |||||||||||| Sbjct 167674 CCAGTTAATGTTTTTACGAAGATTTGCATT 167645 >seq553 Length=76951 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 30642 AAAAAAATTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 30701 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 30702 TGACCACTATACTA 30715 >seq3 Length=1687240 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1139815 AAAAAAATTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1139756 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 1139755 TTACCACTATACTA 1139742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 351247 AAAAAAATACTCCCAGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 351188 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| | ||||| Sbjct 351187 TGACCACTATACTAACTGGGATT 351165 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1149420 AAAAAAAGTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1149361 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 1149360 TTACCACTATACTA 1149347 >seq531 Length=395284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 60042 AAATTAACGTTTATG--AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGC 60099 ||||||| | ||| ||||| ||||| | | ||||||||||||| |||||||||| Sbjct 377439 AAATTAAAATGAATGGAAAAAAACATCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGC 377498 Query 60100 GTGACAGGCGGACATACTCACCACTATACTACCGAGGA-TTGAATAT 60145 ||||||||||| ||||| |||||||||||| | ||| ||||| || Sbjct 377499 GTGACAGGCGGGGATACTGACCACTATACTATCTGGGACTTGAAAAT 377545 >seq225 Length=154944 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | |||| | | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 56423 GAAAAAAATACTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 56364 Query 60116 CTCACCACTATACTA 60130 || |||||||||||| Sbjct 56363 CTGACCACTATACTA 56349 >seq893 Length=103898 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 102094 AAAAAAAGTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 102153 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 102154 TTACCACTATACTA 102167 >seq175 Length=389053 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 383610 AAAAAAAGTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 383551 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 383550 TTACCACTATACTA 383537 >seq17 Length=472010 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 321713 AAAAAAAATCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 321772 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 321773 TGACCACTATACTA 321786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571767015585560