Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq241 129 9e-25
seq412 98.7 1e-15
>seq241
Length=949647
Score = 129 bits (142), Expect = 9e-25
Identities = 112/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| | ||| ||||||||||| | ||| ||||| || ||||| ||||| |
Sbjct 166050 TTCCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAG 165991
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | ||| || ||||||||||||||||| ||||| | ||| ||||| || |
Sbjct 165990 AAAGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTG 165931
Query 146169 GAATTCCTTCTTTATCTTG 146187
| |||||||| ||||||||
Sbjct 165930 GGATTCCTTCCTTATCTTG 165912
Score = 123 bits (136), Expect = 4e-23
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| | ||| ||||| ||||| | ||| |||||||| || || || || |
Sbjct 166962 TTCCACCTCTCAATCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAG 166903
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | ||| || | |||||| |||||||| || || | ||| ||||| ||||
Sbjct 166902 AAAGAGTACGCCCATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAG 166843
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
|||||||||||||||| || ||||| ||| ||| |
Sbjct 166842 GAATTCCTTCTTTATCCTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGTTCAA 166783
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| | ||||| |||||||| ||||| || |||| || ||||||||
Sbjct 166782 CTTCCAAGGTGATGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 166734
Score = 122 bits (134), Expect = 1e-22
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| ||||| | ||| ||||| ||||| | || |||||||| || || ||||| |
Sbjct 166506 TTCCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAG 166447
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | ||| ||||||||||| |||||||| || |||| ||| ||||| || |
Sbjct 166446 AAAGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGTG 166387
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
| |||||||| |||||||| || || || ||| |
Sbjct 166386 GGATTCCTTCCTTATCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTTCGA 166327
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
|||| | |||||| |||||||| ||||| || |||| || |||||||||
Sbjct 166326 CTTCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCATT 166277
Score = 122 bits (134), Expect = 1e-22
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| | || ||||| ||||| | || |||||||| || || ||||| |
Sbjct 167646 TTCCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAG 167587
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | ||| ||||||||||| || || || || || | ||| ||||| || |
Sbjct 167586 AAAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTG 167527
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
| |||||||| || ||||| ||||| ||| ||| |
Sbjct 167526 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCA 167467
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
||||||| ||||| ||||| || ||||||||||| | ||| |||||||||
Sbjct 167466 CTTCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCATT 167417
Score = 120 bits (132), Expect = 5e-22
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| ||||| | ||| || |||||||| | || |||||||| || || ||||| |
Sbjct 166278 TTCCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAG 166219
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | || ||||||||||| |||||||| || |||| ||| ||||| ||||
Sbjct 166218 AAAGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAG 166159
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||||||||| ||
Sbjct 166158 GAATTCCTTCTTTATCCTG 166140
Score = 113 bits (124), Expect = 7e-20
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|| ||||| | ||| ||||| || ||||| ||||||||||| || | | ||| ||
Sbjct 167854 ACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAAAGGGTACGTCCATCTTCC 167795
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
|||||||| ||||| |||||||| | || ||||| || || |||||||| || |||||
Sbjct 167794 AATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 167735
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
|||||| ||| ||| ||||||| ||||| |||||
Sbjct 167734 ATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACTTCTAAGGTGATGGTTTTT 167675
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278
|| ||||||||||| | ||| |||||||||
Sbjct 167674 CCAGTTAATGTTTTTACGAAGATTTGCATT 167645
Score = 111 bits (122), Expect = 2e-19
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| | ||| |||||||| || | ||||||||| || ||||| ||||| |
Sbjct 167190 TTCCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAG 167131
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | ||| || | |||||| || || || || || | ||| ||||| ||||
Sbjct 167130 AAAGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAG 167071
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||| ||||| ||
Sbjct 167070 GAATTCCTTCCTTATCCTG 167052
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| || | ||| |||||||| || | ||| ||||| || ||||| ||||| |
Sbjct 165822 TTCCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGG 165763
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
|||| || | | ||| |||||||||||||| ||||| ||||| | ||| || || || |
Sbjct 165762 AAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTG 165703
Query 146169 GAATTCCTTCTTTATCTTG 146187
| || || ||||| || ||
Sbjct 165702 GGATCCCCTCTTTGTCCTG 165684
>seq412
Length=275653
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | | ||||| || ||||| || || |||||||| ||||||||||| |||
Sbjct 83015 CCACCACGCAATCTTAGGACTAAATGCAACGTTGATTCTTTCTGAATATTATAATCAGAA 82956
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| | | ||| || | ||||||||| || ||||| || | || |||||||| ||
Sbjct 82955 AGAGTGCGCCCATCTTCGAGTTGTTTTCCCGCGAAAATTAAACGCTGTTGATCCGGTGGG 82896
Query 146171 ATTCCTTCTTTATCTTG 146187
||||| ||||| |||||
Sbjct 82895 ATTCCCTCTTTGTCTTG 82879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743460625795840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |