Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq241 129 9e-25 seq412 98.7 1e-15 >seq241 Length=949647 Score = 129 bits (142), Expect = 9e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||| ||||||||||| | ||| ||||| || ||||| ||||| | Sbjct 166050 TTCCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAG 165991 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || ||||||||||||||||| ||||| | ||| ||||| || | Sbjct 165990 AAAGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTG 165931 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| |||||||| Sbjct 165930 GGATTCCTTCCTTATCTTG 165912 Score = 123 bits (136), Expect = 4e-23 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||| ||||| ||||| | ||| |||||||| || || || || | Sbjct 166962 TTCCACCTCTCAATCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAG 166903 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || | |||||| |||||||| || || | ||| ||||| |||| Sbjct 166902 AAAGAGTACGCCCATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAG 166843 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||||||||||||||| || ||||| ||| ||| | Sbjct 166842 GAATTCCTTCTTTATCCTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGTTCAA 166783 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | ||||| |||||||| ||||| || |||| || |||||||| Sbjct 166782 CTTCCAAGGTGATGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 166734 Score = 122 bits (134), Expect = 1e-22 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| ||||| ||||| | || |||||||| || || ||||| | Sbjct 166506 TTCCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAG 166447 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| ||||||||||| |||||||| || |||| ||| ||||| || | Sbjct 166446 AAAGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGTG 166387 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| |||||||| || || || ||| | Sbjct 166386 GGATTCCTTCCTTATCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTTCGA 166327 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| | |||||| |||||||| ||||| || |||| || ||||||||| Sbjct 166326 CTTCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCATT 166277 Score = 122 bits (134), Expect = 1e-22 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | || ||||| ||||| | || |||||||| || || ||||| | Sbjct 167646 TTCCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAG 167587 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| ||||||||||| || || || || || | ||| ||||| || | Sbjct 167586 AAAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTG 167527 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| || ||||| ||||| ||| ||| | Sbjct 167526 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCA 167467 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||||| ||||| ||||| || ||||||||||| | ||| ||||||||| Sbjct 167466 CTTCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCATT 167417 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| || |||||||| | || |||||||| || || ||||| | Sbjct 166278 TTCCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAG 166219 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | || ||||||||||| |||||||| || |||| ||| ||||| |||| Sbjct 166218 AAAGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAG 166159 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||||||||| || Sbjct 166158 GAATTCCTTCTTTATCCTG 166140 Score = 113 bits (124), Expect = 7e-20 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| | ||| ||||| || ||||| ||||||||||| || | | ||| || Sbjct 167854 ACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAAAGGGTACGTCCATCTTCC 167795 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 |||||||| ||||| |||||||| | || ||||| || || |||||||| || ||||| Sbjct 167794 AATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 167735 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||| ||| ||| ||||||| ||||| ||||| Sbjct 167734 ATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACTTCTAAGGTGATGGTTTTT 167675 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 || ||||||||||| | ||| ||||||||| Sbjct 167674 CCAGTTAATGTTTTTACGAAGATTTGCATT 167645 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||| |||||||| || | ||||||||| || ||||| ||||| | Sbjct 167190 TTCCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAG 167131 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || | |||||| || || || || || | ||| ||||| |||| Sbjct 167130 AAAGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAG 167071 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 167070 GAATTCCTTCCTTATCCTG 167052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || | ||| |||||||| || | ||| ||||| || ||||| ||||| | Sbjct 165822 TTCCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGG 165763 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| || | | ||| |||||||||||||| ||||| ||||| | ||| || || || | Sbjct 165762 AAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTG 165703 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || || ||||| || || Sbjct 165702 GGATCCCCTCTTTGTCCTG 165684 >seq412 Length=275653 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | | ||||| || ||||| || || |||||||| ||||||||||| ||| Sbjct 83015 CCACCACGCAATCTTAGGACTAAATGCAACGTTGATTCTTTCTGAATATTATAATCAGAA 82956 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||||||| || ||||| || | || |||||||| || Sbjct 82955 AGAGTGCGCCCATCTTCGAGTTGTTTTCCCGCGAAAATTAAACGCTGTTGATCCGGTGGG 82896 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| ||||| Sbjct 82895 ATTCCCTCTTTGTCTTG 82879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743460625795840