Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1159 343 1e-89
>seq1159
Length=103958
Score = 343 bits (380), Expect = 1e-89
Identities = 583/837 (70%), Gaps = 6/837 (1%)
Strand=Plus/Plus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
|||||| || || | ||| | || ||||||||||| || || || || |||
Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062
| |||||||||||| ||||| ||||| || |||| || || || | ||| ||
Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950
Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122
||| | ||| || ||||| || || ||||| |||||||| || ||||| || |||||
Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010
Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182
|||| || | || || |||||||| | | ||| || | |||||| || || ||
Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070
Query 16183 ATCTCTTACTACACT-ATTTAACGGAGGGTTTAATAAG-TGTTTAAACATTATACAAGCA 16240
| ||| | ||| | ||| |||| || |||||| | | |||||| || |||||||
Sbjct 50071 A-CTCGTTATACGTTCCTTTGACGG-CTTTTGAATAAGATATGTAAACAATAAACAAGCA 50128
Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300
|| || |||| || ||||| || | ||||| || || ||||| || | ||| |||
Sbjct 50129 AATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGGC 50188
Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360
|||| || || ||||| | |||||| ||||| ||||| || |||||||| |||||
Sbjct 50189 ATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACCC 50248
Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420
||||| || ||||| ||||| || || || || | || |||||||| |||||
Sbjct 50249 TCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCAA 50308
Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480
||| |||||||| ||||| | ||||||||| | | || || || |||||||||
Sbjct 50309 TTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAAA 50368
Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540
| | ||||| ||| ||| |||||||||| || |||| | || |||||||| ||
Sbjct 50369 AATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGAG 50428
Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600
|||||||| || || || || |||||||| ||||| || | ||||| | || || |||
Sbjct 50429 TGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCTGAACT 50488
Query 16601 TC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659
|| || ||||| | ||| |||| |||||||| || |||||||| ||| ||||||||
Sbjct 50489 TCTTGACTAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAA 50547
Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAA 16719
|| | | || ||||||| ||||||||| | | | || ||| | | |
Sbjct 50548 GGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGAG 50607
Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776
|||||| || | ||| || ||||| |||||||| ||||| | |||| ||| ||
Sbjct 50608 ATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTA 50664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462471085032200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |