Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq569 95.1 1e-14 seq241 91.5 1e-13 >seq569 Length=200630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| ||||| ||||| ||||||||||||||| || ||| | || Sbjct 134604 AACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGTCCATCT 134545 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||||||||| || ||||| || || || ||||| || || || | |||||||||||| Sbjct 134544 TCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGGATACCCTCCTTGTCT 134485 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | | | || || ||||| | ||| || || Sbjct 134484 TGGATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAACCTCGAGGGTGATGGTT 134425 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || ||||| || |||||||| Sbjct 134424 TTACCGGTTAGGGTTTTCACGAAAATTTGCAT 134393 >seq241 Length=949647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||||||| ||||||||||| || || ||||| || || ||||| ||| Sbjct 165820 CCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGGAA 165761 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || | |||||||||||| || |||||||| |||||||| || || Sbjct 165760 AGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTGGG 165701 Query 45230 ACACCCTCCTTGTCCGCAATTTT 45252 | ||||| |||||| ||||| Sbjct 165700 ATCCCCTCTTTGTCCTGGATTTT 165678 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| ||||||||||| || || ||||| || || ||||| || Sbjct 167188 CCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAGAA 167129 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || |||||||| |||||||| || || || ||||| || ||||| Sbjct 167128 AGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 167069 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| ||||| ||||| | | | | || ||| || Sbjct 167068 ATTCCTTCCTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACT 167009 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || |||| ||| || ||||| || ||||| Sbjct 167008 TCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 166962 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| |||||||| || || || ||||| || || ||||| || Sbjct 166048 CCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGAA 165989 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || |||| ||||||||| || || ||||| || ||||| || || || Sbjct 165988 AGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 165929 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || ||| || ||||| | | | |||| ||| || Sbjct 165928 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGCTCAACT 165869 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| || |||| ||| || || ||||| ||||| Sbjct 165868 TCCAATGTAATAGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 165822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395041124393617