Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1159 383 2e-101 >seq1159 Length=103958 Score = 383 bits (424), Expect = 2e-101 Identities = 615/879 (70%), Gaps = 6/879 (1%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||| || || | ||| |||| |||||||| ||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 | |||||||||||||||||| ||||| | | | ||| |||||||| ||||| || Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||| | ||| |||| |||||||| || || |||||||||| |||||||| || |||| Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | || |||| || ||||||||||| | ||| || || || ||| ||||| Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 14211 | |||| ||| ||| || || || | | |||| | |||| | |||||| ||||| Sbjct 50071 ACTCGTTATACGTTCCTTTGACGGCTTTTGAATAAGATATGTAAACAATAAACAAGCAAA 50130 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 || |||| | || ||||| | ||| | ||| || ||||| ||||| || ||||| Sbjct 50131 TTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGGCAT 50190 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 || || || ||||| |||||||| || || || || ||| |||||||| || ||||| Sbjct 50191 TAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACCCTC 50250 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 ||| || ||||| || | ||| ||||| ||||| | || ||||| | ||||| || Sbjct 50251 AACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCAATT 50310 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451 | |||||| |||| ||| ||||||| | || | ||||| || || ||||||||| Sbjct 50311 TAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAAAAA 50370 Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 ||| || | ||| | | ||||| || || ||||| | | ||| |||||||||||||| Sbjct 50371 TTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGAGTG 50430 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACC 14569 || ||||| ||||| || |||||||| |||||||| | ||||| | ||| || || Sbjct 50431 AATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACC--TGAACT 50488 Query 14570 TC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 || ||| ||||| | ||| | |||||||| || || || |||||| ||| |||||||| Sbjct 50489 TCTTGACTAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAA 50547 Query 14629 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAA 14688 || || | | ||||| | | || | || | | | | ||| ||||| | Sbjct 50548 GGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGAG 50607 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||| || |||||||||||||| ||| |||||||| ||| | || | ||| || | Sbjct 50608 ATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTATTT 50667 Query 14749 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 |||| || || ||| || |||||||| || || Sbjct 50668 CGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAA 50706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482302930502360