Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_003038.1
Length=212482
Score E
Sequences producing significant alignments: (Bits) Value
seq295 194 2e-44
seq12 84.2 3e-11
>seq295
Length=373786
Score = 194 bits (214), Expect = 2e-44
Identities = 368/538 (68%), Gaps = 39/538 (7%)
Strand=Plus/Plus
Query 104226 AAGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGA 104285
|| ||||| ||| || ||| |||| |||||| ||||||||| || || || |||||
Sbjct 5276 AACAACATATTT-CCTTTATTAACAACAAAACGCGTTTTTTGGCGCGGTGTAGTTGAAGA 5334
Query 104286 ACTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTA--AATCAAAAAGGAGTT 104343
||| |||||||| ||||| |||||||| | | | | ||| || ||||| | |
Sbjct 5335 ACTTTTATGGTTCATTAGAGGGAGTACCAACGCTAAAGATTTAGCAAAGAAAAATGTG-- 5392
Query 104344 AAAATTTGGAATAAAAAT-GCA-----GAATCGTTTTATACACAACA-----AAATCTTT 104392
|| ||||||||| || ||| |||| |||| || ||| || | |
Sbjct 5393 AATATTTGGAATCCCAACAGCACCAGGGAATA--TTTAGACTCAATTGGTTTAACTGATC 5450
Query 104393 TTaaaaaaaaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGG---TGAAA 104449
| || || ||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 5451 GTGAAGAAGGCGATTTGGGACCTATTTATGGTTTTCAATGGAGACATTATGGAGCTGAAT 5510
Query 104450 ATTATATTGGGTGC---GATAATAAATATGGTGGTATAGATCAACTCAAAAATATTATTA 104506
|| || | | | ||| ||| || ||||| |||||| | | || ||||||
Sbjct 5511 ATGGTAATATGCACACTGATTATACTAATAAAGGTATTGATCAATTAATGGATGTTATTA 5570
Query 104507 CAACAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGG 104566
|| ||| ||||| |||| ||| |||| || || | | ||||||||||| | |
Sbjct 5571 ATACTATTAAAAATAAACCAACTGATCGAAGGATAATTATGTGTGCTTGGAACCCCATTG 5630
Query 104567 ATAATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAA 104626
||| ||||||||||| | ||||||||||||||| ||| || ||| |||||
Sbjct 5631 ATATCCCTAAAATGGCATTACCTCCTTGTCATTGTTTAGTTCAATTTTATGTA------- 5683
Query 104627 AAATAAATGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGT 104686
| || ||||| | |||||| |||| |||| | || || ||||||||
Sbjct 5684 --------GCCGAAGGAGAACTTTCTTGTTTATTATATCAACGTTCAGCGGATATGGGTC 5735
Query 104687 TGGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744
| |||||||||||||| || || |||||||| ||| | || |||| || ||||||||
Sbjct 5736 TTGGAGTTCCTTTTAATATCGCCAGTTATGCTTTACTTACTTATATGATTGCTCATGT 5793
>seq12
Length=3765726
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 172358 TTGCCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATC 172417
|| |||||||||| ||| |||| ||| | ||| ||||| || |||| || |||||||||
Sbjct 1434005 TTCCCATGGTAAAGTACAACCAAGCCATTGTATTATATTGTATCCTAAAACTTCTAAATC 1434064
Query 172418 TCCTCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATT 172477
|||||| | | || || || | ||| | ||| | ||| ||| | | |||||||
Sbjct 1434065 TCCTCTGCGAGTTTGTACGCCATCATGACCATCACGACTTACATACTCAAGAGTACCATC 1434124
Query 172478 ATGTGCTTTTTTAGGATCT 172496
||| | |||||| ||||||
Sbjct 1434125 ATGAGGTTTTTTCGGATCT 1434143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 679754261918640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |