Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq295 194 2e-44 seq12 84.2 3e-11 >seq295 Length=373786 Score = 194 bits (214), Expect = 2e-44 Identities = 368/538 (68%), Gaps = 39/538 (7%) Strand=Plus/Plus Query 104226 AAGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGA 104285 || ||||| ||| || ||| |||| |||||| ||||||||| || || || ||||| Sbjct 5276 AACAACATATTT-CCTTTATTAACAACAAAACGCGTTTTTTGGCGCGGTGTAGTTGAAGA 5334 Query 104286 ACTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTA--AATCAAAAAGGAGTT 104343 ||| |||||||| ||||| |||||||| | | | | ||| || ||||| | | Sbjct 5335 ACTTTTATGGTTCATTAGAGGGAGTACCAACGCTAAAGATTTAGCAAAGAAAAATGTG-- 5392 Query 104344 AAAATTTGGAATAAAAAT-GCA-----GAATCGTTTTATACACAACA-----AAATCTTT 104392 || ||||||||| || ||| |||| |||| || ||| || | | Sbjct 5393 AATATTTGGAATCCCAACAGCACCAGGGAATA--TTTAGACTCAATTGGTTTAACTGATC 5450 Query 104393 TTaaaaaaaaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGG---TGAAA 104449 | || || ||||| |||||||||||||||||||| |||||||||||||| |||| Sbjct 5451 GTGAAGAAGGCGATTTGGGACCTATTTATGGTTTTCAATGGAGACATTATGGAGCTGAAT 5510 Query 104450 ATTATATTGGGTGC---GATAATAAATATGGTGGTATAGATCAACTCAAAAATATTATTA 104506 || || | | | ||| ||| || ||||| |||||| | | || |||||| Sbjct 5511 ATGGTAATATGCACACTGATTATACTAATAAAGGTATTGATCAATTAATGGATGTTATTA 5570 Query 104507 CAACAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGG 104566 || ||| ||||| |||| ||| |||| || || | | ||||||||||| | | Sbjct 5571 ATACTATTAAAAATAAACCAACTGATCGAAGGATAATTATGTGTGCTTGGAACCCCATTG 5630 Query 104567 ATAATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAA 104626 ||| ||||||||||| | ||||||||||||||| ||| || ||| ||||| Sbjct 5631 ATATCCCTAAAATGGCATTACCTCCTTGTCATTGTTTAGTTCAATTTTATGTA------- 5683 Query 104627 AAATAAATGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGT 104686 | || ||||| | |||||| |||| |||| | || || |||||||| Sbjct 5684 --------GCCGAAGGAGAACTTTCTTGTTTATTATATCAACGTTCAGCGGATATGGGTC 5735 Query 104687 TGGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744 | |||||||||||||| || || |||||||| ||| | || |||| || |||||||| Sbjct 5736 TTGGAGTTCCTTTTAATATCGCCAGTTATGCTTTACTTACTTATATGATTGCTCATGT 5793 >seq12 Length=3765726 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 172358 TTGCCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATC 172417 || |||||||||| ||| |||| ||| | ||| ||||| || |||| || ||||||||| Sbjct 1434005 TTCCCATGGTAAAGTACAACCAAGCCATTGTATTATATTGTATCCTAAAACTTCTAAATC 1434064 Query 172418 TCCTCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATT 172477 |||||| | | || || || | ||| | ||| | ||| ||| | | ||||||| Sbjct 1434065 TCCTCTGCGAGTTTGTACGCCATCATGACCATCACGACTTACATACTCAAGAGTACCATC 1434124 Query 172478 ATGTGCTTTTTTAGGATCT 172496 ||| | |||||| |||||| Sbjct 1434125 ATGAGGTTTTTTCGGATCT 1434143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679754261918640