Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq241 102 6e-17
seq569 100 2e-16
>seq241
Length=949647
Score = 102 bits (112), Expect = 6e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || ||||||||||||||||||||||| || | | || || |||||| ||||||
Sbjct 167620 TGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGT 167561
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || || |||| | | ||||||||| || | |||||||| || |||| |
Sbjct 167560 TTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTT-T 167502
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| || || | | ||| || ||| || || ||| | ||||||| |||| || ||
Sbjct 167501 AGCTTTAACATTTTCAATGGTATCAGAAGGTTCCACTTCTAGGGTGATGGTTTTTCCAGT 167442
Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326
||||||||||| || |||||||||
Sbjct 167441 TAATGTTTTTACGAAGATTTGCATT 167417
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| | | ||| | ||| | ||||| || |||||||| || |||||||| || |
Sbjct 166505 TCCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGA 166446
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | |||||| |||||||| || ||| |||| | || ||||||||| ||
Sbjct 166445 AAGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGTGG 166386
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||||||||| || | | || || || | | ||| ||||| || |||
Sbjct 166385 GATTCCTTCCTTATCTTGGATCT-TAGCTTTAACATTTTCAATGGTGTCGGATGGTTCGA 166327
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | |||||| |||| || || || || || |||||||||||||||
Sbjct 166326 CTTCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCATT 166277
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| | | ||| | |||| || || |||||||||||||| |||||||| || |
Sbjct 166277 TCCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGA 166218
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | ||||| |||||||| || ||| |||| | || ||||||||| ||
Sbjct 166217 AAGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAGG 166158
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||| ||||| |||| | |||| | | | | ||| || ||| |||||
Sbjct 166157 AATTCCTTCTTTATCCTGGATTT-TAGCTTTAACATTTTCAATGGTATCAGATGGCTCAA 166099
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | || || |||| || ||||||||||| ||||| || ||||||
Sbjct 166098 CTTCCAAAGTAATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCATT 166049
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169
||| | ||| | || || |||||||||||||| ||||||||||| | | || |
Sbjct 166949 TCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAAAGAGTACGCCC 166890
Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229
|||||| | |||||| || ||| |||| | | ||||||||| || | ||||| ||
Sbjct 166889 ATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTT 166830
Query 18230 ATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288
||| || | | || || || | | ||| || ||| || || ||| | |||||
Sbjct 166829 ATCCTGGATCT-TAGCTTTAACATTTTCAATTGTATCAGAAGGTTCAACTTCCAAGGTGA 166771
Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| |||| ||||| || || || ||||||||||||||
Sbjct 166770 TGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 166734
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || ||||| | ||| || | || || || ||||| ||||| || ||||| || |
Sbjct 167873 TCCACCACGTAGGCGAAGAACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGA 167814
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | ||||||||||||||| || || | || | | |||||||| ||
Sbjct 167813 AAGGGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGG 167754
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGG 18276
| |||||||| || |||| | |||| | | | | ||| ||| ||| || ||
Sbjct 167753 GATTCCTTCCTTGTCTTGGATTT-TAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCA 167695
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | ||||||| |||| || || ||||||||||| || |||||||||
Sbjct 167694 CTTCTAAGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCATT 167645
>seq569
Length=200630
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||| || ||||| ||||||||||||||||||| | || | |||||||
Sbjct 134601 ACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGTCCATCTTCC 134542
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
| |||||| || || |||| | | ||||||||| || | || ||||| ||
Sbjct 134541 AGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGGATACCCTCCTTGTCTTGG 134482
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| | |||||| | | | | || || ||| || || | ||||||| ||||
Sbjct 134481 ATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAACCTCGAGGGTGATGGTTTTA 134422
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||||| | ||||| || ||||||||||||
Sbjct 134421 CCGGTTAGGGTTTTCACGAAAATTTGCATT 134392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379311281224365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |