Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1284 637 6e-178 seq1159 349 4e-91 >seq1284 Length=72753 Score = 637 bits (706), Expect = 6e-178 Identities = 1277/1879 (68%), Gaps = 43/1879 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||||||||| | |||||||||||| | || ||| |||||||| ||||| || Sbjct 54605 GTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATAATACATTCCTGTTTTAAGT 54546 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | | ||| ||||||||||| || |||| ||| ||| |||| | |||| Sbjct 54545 CCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGAGTAAGTCGGTTTGGCTACG 54486 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | | ||| | |||||| |||||||||||||| || || | | || || |||||| Sbjct 54485 TAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCGAGCCGCGGCTTGATTTATG 54426 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || | || ||||||||||| |||||||||| | || | ||| || || | Sbjct 54425 ATGCATTTATTTGAAATTTCCCAAACTGTTTTATAAATTTCTTTTAAATCGTCAGGGA-- 54368 Query 62286 TTTG-----TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340 |||| | || ||||| || || | || | | || || ||| || || ||||| Sbjct 54367 TTTGGGGGATGTTTTGAATTGAGCCGCGATTTGCAATTATTTGATTTTTCATTAAATCAT 54308 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||| | || ||||||||| |||| | | || | ||||| |||||||| || | Sbjct 54307 CCCAAAGCCCCCTTTCGGTTAAATCTCTTAATAAGTGGTGATTAACAACTTGGAAATCCC 54248 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 |||| | |||||| || || |||||||| || || ||||| | || || ||||||| Sbjct 54247 CAGAAAGTACTCTTCGCGTATAAATATTCGATGTGTAAGGTTCAAAAGATTCGTTATTTC 54188 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | | ||||||||| ||||| || || ||||| || || | | |||| |||||| | | Sbjct 54187 CTAGAATTTGAGCTGTTGAAGCTGTTGGCATTGGGGCTAAGAGTAAAGAATTTCTTATTC 54128 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 ||| | | | ||||| ||||||| | || ||||| ||| | ||| || || |||| Sbjct 54127 CGTGTTTATTAATTTTTTCTTTTAATTCTTTCCAATCCCATAAATCAGATGGAGTAACAT 54068 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640 ||||| | || || ||||| | || ||| || || ||||| Sbjct 54067 TCCACATATCGTATTGCAAGATTCCTTTACTAACAGGGGAACCTTGGTAAGTTTCATAAA 54008 Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAA 62700 || || || || |||| || |||||| || ||||| ||||||||||||| ||||||| Sbjct 54007 CCCCGTCTTTTTCGGCTAATTCACAACTAGCTTCTAAGGCACCGTAATAAAGCGTTTCAA 53948 Query 62701 AGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAA 62760 |||| | | |||| | || ||||| ||||||||||| || | | | ||||| Sbjct 53947 AGATTTGCACGTTTAATTTATGGGCTTCGGGGCTATCAAAGGGGAGTCTCATCAAAATAA 53888 Query 62761 ACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTT 62820 | || || ||||||||||||| |||||| || || || | ||| | ||||| || ||| Sbjct 53887 AAGCATCTGCTAATCCTTGAATACCAATTCCAATGGGGCGATGGCGTTTATTGGACGTTT 53828 Query 62821 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACAA 62877 |||||||||| | || |||||||||| ||| |||| |||||| | |||| | |||| Sbjct 53827 CAGCTTCTGGGAGTGGGTAATAATTAACATCGATAACTTTATTTAAATTTTTTGTTACAA 53768 Query 62878 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCG---CCCATC---TATTACAA 62931 | | |||| | | | | ||| ||||||||| | || || | | || | Sbjct 53767 CTTTTGTGACGATTT---TTAATTTTTCAAAATCAAAACTTTTCCTGTCGGGTTTAACGA 53711 Query 62932 ACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATT 62991 || ||| | |||| ||||| | |||||| || || | |||| || | | |||| Sbjct 53710 ACTGGTTAACCGCAATTGATGCTAAATTACAAACTGCGATTTCATCAGGAGATGTGTATT 53651 Query 62992 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63051 || || || ||||| | ||| |||| || || || ||||||| |||||| ||||| | Sbjct 53650 CAATGATTTCGGTGCATAAATTGCTACTTTTTATTGTACCTAAATGTTGTTGGTTACTTT 53591 Query 63052 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63111 | ||||| || || ||||| | || ||||||| ||||||||||| ||||| | | Sbjct 53590 TGCGATTACAAGCGTCTTTATACAACATATATGGAGTTCCAGTTTCAATTTGAGACACAA 53531 Query 63112 TAATCGCTTTCCAGACGACTCGAGCCTTTATT------ATAGATTTGTATCTCCTTTCTC 63165 | || |||||||| | ||| || |||| | | |||| | |||||| Sbjct 53530 TTATGGCTTTCCATAATTCTCTGGCGGGTATTTGGCGAACAAATTT---TTTCCTTT--- 53477 Query 63166 TTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 ||||||| | |||| ||| |||| | || |||||| || || | || Sbjct 53476 TTTCGTAATTTTCGTAT--AATTCCACGAATTTTTCCCCCCAACAATCAGATAAACCGGG 53419 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 ||||| || |||||||| | ||||||| | || |||| || ||||||||||| | Sbjct 53418 ACATTGATGAGGACACATTAGCGACCACATTGAATCTTCCTCGACGCGTTTCATAAATAA 53359 Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 |||||||||||| | ||| ||||| |||||| | ||| ||| || || ||||| Sbjct 53358 ATCAGGAATCCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTATT 53299 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 ||||| | || | || | | || ||| | |||||||||||| || || || || | Sbjct 53298 TTTTTTTAAATTTAAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAAA 53239 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 ||||||| | ||| || || || ||||| | |||| ||| || |||||| |||| | Sbjct 53238 CGCTCCAGGTCTTTTATTACCCCCTTGATCGACATATCGAGCTGTATTATTAAAAACCCG 53179 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG-G 63522 |||||||| | | ||||||||| |||||||| || || | ||| | | | | || | Sbjct 53178 TAACATTGGTACTAAACCGTTTGAAATACCATTAGTTCCAGCAATA-ATCGTGCCTTGTG 53120 Query 63523 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582 | ||||||||| | | || ||||| || || |||| || || | || ||| Sbjct 53119 CTCGAATATTATGGACGTTAACTCCAATTCCTCCCGCACTTTTTGATATAATAGCACATT 53060 Query 63583 GTTTTA-ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 || | || | | | | ||||||| || ||| || ||| | | || ||||| Sbjct 53059 GTGAGATACAT-TTAAAAATGCCTTGGATTGAATCCTCCGGCATCATTACTAAGAAACAT 53001 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 |||||||| | |||| || | || |||||| || ||| ||||| ||||| Sbjct 53000 GACGACATTTGTGGGCGAGGTGTCGCTGCGGCAAATAAAGTCGGACTCGCGTGAGTAAAA 52941 Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63759 | || ||||| | ||| |||||| || ||||||||||| || || || || | |||| Sbjct 52940 TACTTCTCAGACATGTA-ATTGTAAGTTTCAATAGCTGATTCAATGTCTTCACCG-TGAA 52883 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 | || || || || ||||||||||| || || || | |||| ||||||| ||| |||| Sbjct 52882 TCCCAACGGCCACGCGCATTAACATATGTTGGGGACGTTCAGCAATTTTTCCGTTGATTT 52823 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 | | | || || ||| | ||||||||||||||||| || ||||| || || || | Sbjct 52822 TTAGGAGATATGAACGTTCGAGTGTTTTAAAACCAAAATAATTATATGAGAAATCACGAT 52763 Query 63880 CGTAAATAATAACCGAATT 63898 ||||||| ||| ||||| Sbjct 52762 CGTAAATGATACAAGAATT 52744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070 ||| |||| || ||||| || || ||||| | || || ||||| || || || | ||| Sbjct 43457 AATTGTTTCTTCGTTTCTTTATGGAGATTAGTCATAGCAATTCTAGCAGCAAGTGTTGCA 43398 Query 64071 TAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCT 64130 ||||| ||||| | |||| | || || || |||| || || | |||||||| || Sbjct 43397 TAATCAGGATGGTCTGTAATTTTTGTAGCAGCGGTTTCAGCAGCTAAGGTGTCCAACTCA 43338 Query 64131 ACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || || ||| | ||||||||||||||||| Sbjct 43337 ACTGTGGTAACGCCTGGATAAAGACCTTGAATAACCTTCAT 43297 >seq1159 Length=103958 Score = 349 bits (386), Expect = 4e-91 Identities = 616/891 (69%), Gaps = 9/891 (1%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||||||||| || || || ||| || || |||||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 | ||| |||||||| ||||| || |||||| | ||||| | | || | ||||| | Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 || | ||| || || || || || || ||| | | |||||||| || || | Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 |||| |||||||| |||| | |||||| |||||||| ||||||| ||||| Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 33530 AAATC--TAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTAAACATCAAACATGC 33586 | || || ||| ||| ||| || ||||| || | |||||| ||||| || Sbjct 50071 AC-TCGTTATACGTTCCTTTGA-CGGCTTTTG-AATAAGATATGTAAACAATAAACAAGC 50127 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || ||| | || | ||| || || | ||||||||| ||||||||||| | ||||| Sbjct 50128 AAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGG 50187 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| || |||||||| | |||||| || | || || ||| |||||||| || || Sbjct 50188 CATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACC 50247 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCA 33763 || || || ||||| |||| | | || ||| || ||| | | | ||||| Sbjct 50248 CTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCA 50307 Query 33764 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 ||| ||||||||| || |||||||| |||||||| | |||||| ||||| ||||| | Sbjct 50308 ATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAA 50367 Query 33824 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33883 | | | ||||| || ||| || |||||| || || || | || |||||||| || Sbjct 50368 AAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGA 50427 Query 33884 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 33943 ||||| |||||||| || || ||||| ||||| ||||| | || || || | ||| || Sbjct 50428 GTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCTGAAC 50487 Query 33944 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAA 34003 |||| || ||| ||||| |||||||||| || || ||||||||| || |||||||| Sbjct 50488 TTCTTGACTAAAACGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAA 50547 Query 34004 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 34063 || || ||||| ||||||| ||||| |||| | | | ||||| ||||| Sbjct 50548 GGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGAG 50607 Query 34064 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 |||||| || | ||| |||||||| ||||||||||| || || |||| ||| || | Sbjct 50608 ATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTATTT 50667 Query 34124 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| || ||| |||| | || || |||| || || | ||||||| Sbjct 50668 CGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAAACGTCTTGGATT 50718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629761884760560