Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1284 527 6e-145 seq1159 414 9e-111 >seq1284 Length=72753 Score = 527 bits (584), Expect = 6e-145 Identities = 1242/1863 (67%), Gaps = 29/1863 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| || || | | ||| | ||| ||||| | |||||||||||| ||| Sbjct 54611 TCGACGGTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATAATACATTCCTGTT 54552 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || || ||| ||||||||||| || || | | ||| || || || Sbjct 54551 TTAAGTCCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGAGTAAGTCGGTTTG 54492 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || | | | ||||| |||||||| || || || |||| | || || Sbjct 54491 GCTACGTAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCGAGCCGCGGCTTGA 54432 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || || ||||| | || || |||||||| |||||||| |||| ||||| || || Sbjct 54431 TTTATGATGCATTTATTTGAAATTTCCCAAACTGTTTTATAAATTTCTTTTAAATCGTCA 54372 Query 37030 GGTAAATCTAA-ATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | | ||||| |||| || || || | | ||| ||| || || | Sbjct 54371 GGGATTTGGGGGATGTTTTGAATTGAGCCGCGATTTGCAATTATTTGATTTTTCATTAAA 54312 Query 37087 TTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAA 37146 | || ||| | || ||| ||||| |||| ||| |||| ||||| || ||| Sbjct 54311 TCATCCCAAAGCCCCCTTTCGGTTAAATCTCTTAATAAGTGGTGATTAACAACTTGGAAA 54252 Query 37147 TCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTA 37206 || ||||| | |||||||| ||||| ||||| || || ||||||| || || ||| Sbjct 54251 TCCCCAGAAAGTACTCTTCGCGTATAAATATTCGATGTGTAAGGTTCAAAAGATTCGTTA 54192 Query 37207 TTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTC 37266 || | || ||||||| ||| || || || |||||||| |||| || | |||||| Sbjct 54191 TTTCCTAGAATTTGAGCTGTTGAAGCTGTTGGCATTGGGGCTAAGAGTAAAGAATTTCTT 54132 Query 37267 AATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT- 37325 | ||| ||| |||||||| | | ||||| ||| ||||||||||||||||| | ||| | Sbjct 54131 ATTCCGTGTTTATTAATTTTTTCTTTTAATTCTTTCCAATCCCATAAATCAGATGGAGTA 54072 Query 37326 -CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||||||||| ||||| | || |||||||| | || ||| | | || || | Sbjct 54071 ACATT--CCACATATCGTATTGCAAGATTCCTTTACTAACAGGGGAACCTTGGTAAGTTT 54014 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 ||||| |||| ||| |||| ||| ||||||| ||||| || | ||||| | | Sbjct 54013 CATAAACCCCGTCTTTTTCGGCTAATTCACAACTAGCTTCTAAGGCACCGTAATAAAGCG 53954 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 |||| || ||||| | |||||| | | ||||| |||||| || | | || | Sbjct 53953 TTTCAAAGATTTGCACGTTTAATTTATGGGCTTCGGGGCTATCAAAGGGGAGTCTCATCA 53894 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 | ||||| |||| || || || |||| ||| || || ||||| | ||| ||||| | Sbjct 53893 AAATAAAAGCATCTGCTAATCCTTGAATACCAATTCCAATGGGGCGATGGCGTTTATTGG 53834 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 | | | |||| | ||| |||||||| | ||| || | |||||||| |||||| Sbjct 53833 ACGTTTCAGCTTCTGGGAGTGGGTAATAATTAACATCGATAACTTTATTTAAATTTTTTG 53774 Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTA-------TTA 37677 || | ||| || | ||| | || || || || || || || || ||| Sbjct 53773 TTACAACTTTTGTGACGATTTTTAATTTTTCAAA-ATCAAAACTTTTCCTGTCGGGTTTA 53715 Query 37678 ACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTA 37737 || || | | | || ||| ||| ||| |||||| || || | |||||| | Sbjct 53714 ACGAACTGGTTAACCGCAATTGATGCTAAATTACAAACTGCGATTTCATCAGGAGATGTG 53655 Query 37738 AATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 ||| || || || || || | ||| || | | ||||| || |||| ||| || Sbjct 53654 TATTCAATGATTTCGGTGCATAAATTGCTACTTTTTATTGTACCTAAATGTTGTTGGTTA 53595 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 ||| |||||||| |||||||| | ||||| || ||||| ||| ||||||| | Sbjct 53594 CTTTTGCGATTACAAGCGTCTTTATACAACATATATGGAGTTCCAGTTTCAATTTGAGAC 53535 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGC-----TTTAACGATCGCTTTAAtttttttCT 37912 | || || | ||||||||| ||| || ||| ||| | |||||||| || Sbjct 53534 ACAATTATGGCTTTCCATAATTCTCTGGCGGGTATTTGGCGAACA----AATTTTTTCCT 53479 Query 37913 TTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTG 37972 || ||||||| | | ||||||| || | | |||||| ||| |||| || | Sbjct 53478 TT-TTTCGTAATTTTCGTATAATTCCACGAATTTTTCCCCCCAACAATCAGATAAACCGG 53420 Query 37973 GACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATA 38032 |||||| ||||||||||| ||||| | ||||| || ||||||| |||||||| Sbjct 53419 GACATTGATGAGGACACATTAGCGACCACATTGAATCTTCCTCGACGCGTTTCATAAATA 53360 Query 38033 AATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACAT 38092 ||||||| | |||||| ||| |||||||||| | | ||| |||||| ||| || Sbjct 53359 AATCAGGAATCCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTAT 53300 Query 38093 TCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACA 38152 | ||| |||| ||| |||||| | | ||| || ||||| ||||||| |||||| | | Sbjct 53299 TTTTTTTTAAATTTAAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAA 53240 Query 38153 TTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTC 38212 ||||| |||||||||| ||| || |||| | ||||| | |||| |||||| | | | Sbjct 53239 ACGCTCCAGGTCTTTTATTACCCCCTTGATCGACATATCGAGCTGTATTATTAAAAACCC 53180 Query 38213 TTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAG 38272 |||||| ||||||| ||| || || | || || | || | ||| || || | | Sbjct 53179 GTAACATTGGTACTAAACCGTTTGAAATACCATTAGTTCCAGCAATAATCGTGCCTTGTG 53120 Query 38273 CTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331 |||| |||||| | || || ||| ||||| || ||| ||||||||| | ||| ||| Sbjct 53119 CTCGAATATTA-TGGACGTTAACTCCAATTCCTCCCGCACTTTTTGATATAATAGCACAT 53061 Query 38332 TGTTTTA-ACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 ||| | || | | ||| || |||| || || ||| || || || ||||| Sbjct 53060 TGTGAGATACAT-TTAAAAATGCCTTGGATTGAATCCTCCGGCATCATTACTAAGAAACA 53002 Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 |||||||| || || || | ||| |||||| || ||| || || | || Sbjct 53001 TGACGACATTTGTGGGCGAGGTGTCGCTGCGGCAAATAAAGTCGGACTCGCGTGAGTAAA 52942 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 | || || |||| ||||| || ||||| || | || || || | |||||||| Sbjct 52941 ATACTTCTCAGACATGTAATTGTAAGTTTCAATAGCTGATTCAATGTCTTCACCGTGAAT 52882 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTT 38570 || | | || | ||||| ||||||||| || | ||| ||||| || ||| Sbjct 52881 CCCAACGGCCACGCGCATTAACATATGTTGGGGACGTTCAGCAATTTTTCCGTTGATTTT 52822 Query 38571 AAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATC 38630 || ||||| || ||| | |||||| | ||||||||| ||||||| |||| | ||| Sbjct 52821 TAGGAGATATGAACGTTCGAGTGTTTTAAAACCAAAATAATTATATGAGAAATCACGATC 52762 Query 38631 GTA 38633 ||| Sbjct 52761 GTA 52759 >seq1159 Length=103958 Score = 414 bits (458), Expect = 9e-111 Identities = 591/827 (71%), Gaps = 9/827 (1%) Strand=Plus/Plus Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAAC 11449 |||||| | |||||| ||| |||||| | |||| | | |||||||||||| | Sbjct 49883 GATATAAGATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGT 49942 Query 11450 TCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATA 11509 || |||||||| | ||| || || || || || ||||| ||||||||| |||||||| Sbjct 49943 TCAGTTAATAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATC 50002 Query 11510 CCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA 11569 || || | | ||||||| |||| | || ||||| |||| ||| || | ||||||||| Sbjct 50003 CCGATTAAACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCG 50062 Query 11570 ATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAA-ATGTTTAAACATTAA 11628 || || ||||||| |||||| || || || ||||| || | |||||| ||| Sbjct 50063 CGAATAATACTCGTTATACGTTCCTTTGACGGCTTTTG-AATAAGATATGTAAACAATAA 50121 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||| || ||||||||||||| || | |||| |||||||||||| ||||| Sbjct 50122 ACAAGCAAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAA 50181 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 |||||||| || || || ||||| | |||||| ||||| ||||| || |||||||| Sbjct 50182 ACCGGGCATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAA 50241 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGA 11805 || ||||| || || ||||| || |||| | ||| ||| | | || || ||| Sbjct 50242 AATACCCTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACT 50301 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| ||| |||||||||||||||||||| || || | ||||| || ||||| Sbjct 50302 AATCCAATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTT 50361 Query 11866 AAATAAATGCATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATAC 11923 ||||||| ||| ||| | | || ||| | ||| || || ||||| | || ||| Sbjct 50362 AAATAAA--AATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTAC 50419 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 ||||| || ||||||||||| ||||| |||||||| || || ||||| ||||| || | Sbjct 50420 ATTTCAGAGTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTT 50479 Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 ||| || || | ||| | ||| ||||||| || |||||||| |||||| || Sbjct 50480 ACCTGAACTTCTTGACTAAAACGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCA 50539 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAA 12103 |||||||| |||| | ||| ||||| | ||||| | |||||| | | |||| Sbjct 50540 GCAAAAAAGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAA 50599 Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | || | |||||| || | ||||||||||||| ||||||||| || | | ||| Sbjct 50600 TGATTGAGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGT 50659 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || || | ||| |||||| |||||| ||| || |||| ||||| Sbjct 50660 TTGTATTTCGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAA 50706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468483353124880