Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1284 605 4e-168 seq1159 349 5e-91 >seq1284 Length=72753 Score = 605 bits (670), Expect = 4e-168 Identities = 1260/1871 (67%), Gaps = 43/1871 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||||||||| | |||||||||||| | || ||| |||||||| ||||| || Sbjct 54605 GTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATAATACATTCCTGTTTTAAGT 54546 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | | ||| ||||||||||| || |||| ||| ||| |||| | |||| Sbjct 54545 CCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGAGTAAGTCGGTTTGGCTACG 54486 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 | | ||| | |||||| |||||||||||||| || || | | || || |||||| Sbjct 54485 TAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCGAGCCGCGGCTTGATTTATG 54426 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || | || ||||||||||| |||||||||| | || | ||| || || | Sbjct 54425 ATGCATTTATTTGAAATTTCCCAAACTGTTTTATAAATTTCTTTTAAATCGTCAGG--GA 54368 Query 65079 TTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 65133 |||| | || ||||| || || | || ||| || || ||| || || ||||| Sbjct 54367 TTTGGGGGATGTTTTGAATTGAGCCGCGATTTGCAATTATTTGATTTTTCATTAAATCAT 54308 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 ||| | || ||||||||| |||| | | || ||||||| ||||| || || | Sbjct 54307 CCCAAAGCCCCCTTTCGGTTAAATCTCTTAATAAGTGGTGATTAACAACTTGGAAATCCC 54248 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 |||| | |||||| || || |||||||| || || ||||| | ||| || ||||||| Sbjct 54247 CAGAAAGTACTCTTCGCGTATAAATATTCGATGTGTAAGGTTCAAAAGATTCGTTATTTC 54188 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 | | ||||||||| ||||| || || ||||| || || | | |||| |||||| | | Sbjct 54187 CTAGAATTTGAGCTGTTGAAGCTGTTGGCATTGGGGCTAAGAGTAAAGAATTTCTTATTC 54128 Query 65314 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373 ||| | | | ||||| ||||||| || ||||| ||| | ||| || || ||| Sbjct 54127 CGTGTTTATTAATTTTTTCTTTTAATTCTTTCCAATCCCATAAATCAGATGGAGTAACAT 54068 Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 65433 ||| | || || ||||| | || ||| || || || || Sbjct 54067 TCCACATATCGTATTGCAAGATTCCTTTACTAACAGGGGAACCTTGGTAAGTTTCATAAA 54008 Query 65434 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 65493 || || || || |||| ||||||||| || ||||| ||||||||||||| ||||| | Sbjct 54007 CCCCGTCTTTTTCGGCTAATTCACAACTAGCTTCTAAGGCACCGTAATAAAGCGTTTCAA 53948 Query 65494 AGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAA 65553 |||| | | |||| | || ||||| |||||||||| || | | | ||||| Sbjct 53947 AGATTTGCACGTTTAATTTATGGGCTTCGGGGCTATCAAAGGGGAGTCTCATCAAAATAA 53888 Query 65554 ACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTT 65613 | || |||||||||||||||| |||||| || || || | ||| | ||||| || ||| Sbjct 53887 AAGCATCTGCTAATCCTTGAATACCAATTCCAATGGGGCGATGGCGTTTATTGGACGTTT 53828 Query 65614 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA---TTTCTGACAA 65670 |||||||||| | || |||||||||| ||| |||| |||||| | | ||| | |||| Sbjct 53827 CAGCTTCTGGGAGTGGGTAATAATTAACATCGATAACTTTATTTAAATTTTTTGTTACAA 53768 Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA------TCGCTCATCTATTACAA 65724 | | |||| | || | ||| ||||||||| | || | | || | Sbjct 53767 CTTTTGTGACGA---TTTTTAATTTTTCAAAATCAAAACTTTTCCTGTCGGGTTTAACGA 53711 Query 65725 ACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 65784 || ||| | |||| ||||| | ||||||||| || | |||| || | | |||| Sbjct 53710 ACTGGTTAACCGCAATTGATGCTAAATTACAAACTGCGATTTCATCAGGAGATGTGTATT 53651 Query 65785 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 65844 || || || ||||| | ||| |||| || || || ||||||| |||||| ||||| | Sbjct 53650 CAATGATTTCGGTGCATAAATTGCTACTTTTTATTGTACCTAAATGTTGTTGGTTACTTT 53591 Query 65845 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 65904 | ||||| || || ||||| | || ||||||| ||||||||||| ||||| | | Sbjct 53590 TGCGATTACAAGCGTCTTTATACAACATATATGGAGTTCCAGTTTCAATTTGAGACACAA 53531 Query 65905 TAATCGCTTTCCAGACGACTCGAGCCTTTATT------ATAGATTTGTATCTCTTTTC-- 65956 | || |||||||| | ||| || |||| | | |||| | || ||||| Sbjct 53530 TTATGGCTTTCCATAATTCTCTGGCGGGTATTTGGCGAACAAATTTTTTCCTTTTTTCGT 53471 Query 65957 -TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 ||||||||| | | || |||| | || |||||| || || || | Sbjct 53470 AATTTTCGTATAAT---TCCA------CGAATTTTTCCCCCCAACAATCAGATAAACCGG 53420 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 |||||| || |||||||| | ||||||| | || |||| || ||||||||||| | Sbjct 53419 GACATTGATGAGGACACATTAGCGACCACATTGAATCTTCCTCGACGCGTTTCATAAATA 53360 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 |||||||||||| | ||| |||||||||||| | ||| ||| || || |||| Sbjct 53359 AATCAGGAATCCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTAT 53300 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 | ||||| | || | || | | || ||| |||||||||||| || || || || | Sbjct 53299 TTTTTTTTAAATTTAAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAA 53240 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 ||||||| | ||| || || || ||||| | |||| ||| || |||||| |||| | Sbjct 53239 ACGCTCCAGGTCTTTTATTACCCCCTTGATCGACATATCGAGCTGTATTATTAAAAACCC 53180 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 |||||||| | | ||| || || ||||||| || || | ||| | || || Sbjct 53179 GTAACATTGGTACTAAACCGTTTGAAATACCATTAGTTCCAGCAATAATCGTGCCTTGTG 53120 Query 66316 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 66375 | ||||||||| | | || ||||| || || |||| || || | || ||| Sbjct 53119 CTCGAATATTATGGACGTTAACTCCAATTCCTCCCGCACTTTTTGATATAATAGCACATT 53060 Query 66376 GTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 66434 || | || | | | | ||||| | || ||| ||| ||| | | || ||||| Sbjct 53059 GTGAGATACAT-TTAAAAATGCCTTGGATTGAATCCTCCGGCATCATTACTAAGAAACAT 53001 Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 |||||||| | ||| || | || |||||| || ||| ||||| ||||| Sbjct 53000 GACGACATTTGTGGGCGAGGTGTCGCTGCGGCAAATAAAGTCGGACTCGCGTGAGTAAAA 52941 Query 66495 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 66552 | || ||||| | ||| |||||| || ||||||||||| || || || || | |||| Sbjct 52940 TACTTCTCAGACATGTA-ATTGTAAGTTTCAATAGCTGATTCAATGTCTTCACCG-TGAA 52883 Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612 | || || || || ||||||||||| || || || | |||| | || || ||| |||| Sbjct 52882 TCCCAACGGCCACGCGCATTAACATATGTTGGGGACGTTCAGCAATTTTTCCGTTGATTT 52823 Query 66613 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 66672 | | | || || ||| | ||||||||||||||||| || ||||| || || || | Sbjct 52822 TTAGGAGATATGAACGTTCGAGTGTTTTAAAACCAAAATAATTATATGAGAAATCACGAT 52763 Query 66673 CGTAAATAATA 66683 ||||||| ||| Sbjct 52762 CGTAAATGATA 52752 >seq1159 Length=103958 Score = 349 bits (386), Expect = 5e-91 Identities = 605/873 (69%), Gaps = 11/873 (1%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||||||||| || || || ||| || || |||||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 | ||| ||||| |||||||| | ||| || | ||||| | | || | ||||| | Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 || | ||| || ||||| || || || ||| | | |||||||| || || | Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 |||| |||||||| |||| | |||||| |||||||| ||||| || ||||| Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 36106 A---GATATTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATG 36161 | | ||| || ||| ||| | | | ||||| || | |||||| ||||| | Sbjct 50071 ACTCGTTAT-AC-GTTCCTTTGACGGCTT--TTGAATAAGATATGTAAACAATAAACAAG 50126 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | || ||| | |||| ||| || || | ||||||||| || |||||||| | |||| Sbjct 50127 CAAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGG 50186 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 36281 |||||| || |||||||| | |||||| || | ||||| ||| ||||||||||| | Sbjct 50187 GCATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATAC 50246 Query 36282 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCC 36338 | || || |||||||| |||| | | || ||| || || | | | |||| Sbjct 50247 CCTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCC 50306 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | ||| ||||||||| || |||||||| |||||||| | || || || || ||||| | Sbjct 50307 AATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATA 50366 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | | | ||||| || ||| || ||| || ||||| || | || |||||||| | Sbjct 50367 AAAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAG 50426 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 | ||||| |||||||| || |||||||| ||||| ||||| | || || || | ||| | Sbjct 50427 AGTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCTGAA 50486 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 ||||| || ||| ||||| |||||||||| || || ||||| ||| || ||||||| Sbjct 50487 CTTCTTGACTAAAACGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAA 50546 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | || || ||||| ||||||| |||||| |||| | | | ||||| ||||| Sbjct 50547 AGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGA 50606 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 |||||| || | ||| |||||||| ||||||||||| || || |||| ||| || Sbjct 50607 GATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTATT 50666 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAA 36731 | ||| || ||| |||| | ||| ||||||| Sbjct 50667 TCGCCCAAATATCAGGATACTCAATGGGAAAAA 50699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658114576388680