Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq1159 376 2e-99
>seq1159
Length=103958
Score = 376 bits (416), Expect = 2e-99
Identities = 616/881 (70%), Gaps = 10/881 (1%)
Strand=Plus/Plus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
|||||| || || | ||| |||| |||||||| ||||| || || ||||||
Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890
Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699
| |||||||||||||||||| |||| | | | ||| |||||||| ||||| ||
Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950
Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759
||| | ||| |||| ||||||||| || || |||||||||| |||||||| || ||||
Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010
Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819
| || |||| || ||||||||||| | ||| || || || || |||||
Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070
Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879
| | || ||| || || || || | | |||| | |||| | |||||| |||||
Sbjct 50071 ACTCGTTATACGTTCCTTTGACGGCTTTTGAATAAGATATGTAAACAATAAACAAGCAAA 50130
Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939
|| |||| | || ||||| | ||| | ||| || ||||| ||||| || |||||
Sbjct 50131 TTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGGCAT 50190
Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999
|| || || ||||| |||||||| || || ||||| || |||||||| || |||||
Sbjct 50191 TAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACCCTC 50250
Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059
||| || ||||| || | ||| ||||| ||||| | || ||||| | ||||| ||
Sbjct 50251 AACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCAATT 50310
Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119
| |||||| |||| ||| ||||||| | || | ||||| || || ||||||||| |
Sbjct 50311 TAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAAAAA 50370
Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179
||| || | ||| | | ||||| || || ||||| | | ||| ||||||||||||||
Sbjct 50371 TTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGAGTG 50430
Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACT 14237
|| ||||| ||||| || |||||||| ||||| || | ||||||| ||| || |||
Sbjct 50431 AATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACC--TGAACT 50488
Query 14238 TC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296
|| || ||||| | ||| | |||||||| || || || |||||| ||| ||||||||
Sbjct 50489 TCTTGACTAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAA 50547
Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT-- 14354
|| || | | ||||| | | || | || | | | | ||| ||||| |||
Sbjct 50548 GGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAAT--GATTG 50605
Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414
| ||| || |||||||||||||| ||| |||||||| ||| | || | ||| ||
Sbjct 50606 AGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTAT 50665
Query 14415 ATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455
| |||| || || ||| || |||||||| || ||
Sbjct 50666 TTCGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAA 50706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479685562061800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |