Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1159 376 2e-99 >seq1159 Length=103958 Score = 376 bits (416), Expect = 2e-99 Identities = 616/881 (70%), Gaps = 10/881 (1%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| || || | ||| |||| |||||||| ||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 | |||||||||||||||||| |||| | | | ||| |||||||| ||||| || Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| | ||| |||| ||||||||| || || |||||||||| |||||||| || |||| Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | || |||| || ||||||||||| | ||| || || || || ||||| Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | || ||| || || || || | | |||| | |||| | |||||| ||||| Sbjct 50071 ACTCGTTATACGTTCCTTTGACGGCTTTTGAATAAGATATGTAAACAATAAACAAGCAAA 50130 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 || |||| | || ||||| | ||| | ||| || ||||| ||||| || ||||| Sbjct 50131 TTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGGCAT 50190 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || || || ||||| |||||||| || || ||||| || |||||||| || ||||| Sbjct 50191 TAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACCCTC 50250 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||| || ||||| || | ||| ||||| ||||| | || ||||| | ||||| || Sbjct 50251 AACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCAATT 50310 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 | |||||| |||| ||| ||||||| | || | ||||| || || ||||||||| | Sbjct 50311 TAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAAAAA 50370 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 ||| || | ||| | | ||||| || || ||||| | | ||| |||||||||||||| Sbjct 50371 TTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGAGTG 50430 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACT 14237 || ||||| ||||| || |||||||| ||||| || | ||||||| ||| || ||| Sbjct 50431 AATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACC--TGAACT 50488 Query 14238 TC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 || || ||||| | ||| | |||||||| || || || |||||| ||| |||||||| Sbjct 50489 TCTTGACTAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAA 50547 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT-- 14354 || || | | ||||| | | || | || | | | | ||| ||||| ||| Sbjct 50548 GGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAAT--GATTG 50605 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414 | ||| || |||||||||||||| ||| |||||||| ||| | || | ||| || Sbjct 50606 AGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTAT 50665 Query 14415 ATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 | |||| || || ||| || |||||||| || || Sbjct 50666 TTCGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAA 50706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479685562061800