Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1159 369 4e-97 >seq1159 Length=103958 Score = 369 bits (408), Expect = 4e-97 Identities = 612/879 (70%), Gaps = 6/879 (1%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| || || | ||| |||| ||||| || ||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 | ||||||||| |||||||| ||||| | | | ||| |||||||| ||||| ||| Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||| | ||| |||| ||||||||| || || |||||||||| |||||||| || |||| Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | || |||| || |||||||||||| | ||| || || || ||| ||||| Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 | || | ||| || || || || | | |||| | |||| | |||||| ||||| Sbjct 50071 ACTCGTTATACGTTCCTTTGACGGCTTTTGAATAAGATATGTAAACAATAAACAAGCAAA 50130 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 || |||| | || ||||| | ||| | ||| || ||||| ||||| || ||||| Sbjct 50131 TTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGGCAT 50190 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || || || ||||| |||||||| || || || || ||| |||||||| || ||||| Sbjct 50191 TAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACCCTC 50250 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 ||| || ||||| || | || ||||| ||||| | || ||||| | ||||| || Sbjct 50251 AACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCAATT 50310 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 | |||||| |||| ||| ||||||| | || | |||||||| || || |||||| Sbjct 50311 TAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAAAAA 50370 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 ||| || | ||| | | ||||| || || ||||| | | ||| |||||||||||||| Sbjct 50371 TTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGAGTG 50430 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACC 14025 || ||||| ||||| || |||||||| |||||||| | ||||| | ||| || || Sbjct 50431 AATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACC--TGAACT 50488 Query 14026 TC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || || ||||| | ||| | || ||||| || ||||| |||||| ||| |||||||| Sbjct 50489 TCTTGACTAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAA 50547 Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAA 14144 || || | | ||||| | | || | || | | | | ||| ||||| | Sbjct 50548 GGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGAG 50607 Query 14145 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 ||| || |||||||||||||| ||| |||||||| ||| | || | ||| || | Sbjct 50608 ATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTATTT 50667 Query 14205 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 |||| || || ||| || |||||||| || || Sbjct 50668 CGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAA 50706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478546462838280