Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq241 116 3e-21 seq569 89.7 4e-13 seq412 86.0 5e-12 >seq241 Length=949647 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| |||| ||| |||||||| | |||||||||||| Sbjct 165820 CCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGGAA 165761 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || |||||||| |||||||| ||||| || ||||| || | || Sbjct 165760 AGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTGGG 165701 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| | | || || | ||| ||||| | |||||| Sbjct 165700 ATCCCCTCTTTGTCCTGGATTTTCGCCTTCACATTTTCAATAGTGTCAGATGGCTCGACC 165641 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || ||||| || || | |||||||| ||||| ||||| Sbjct 165640 TCTAACGTGATGGTTTTACCAGTCAAGGTTTTCACGAAAATCTGCAT 165594 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || ||||| | |||| |||||||| | ||||||||| || Sbjct 167872 CCACCACGTAGGCGAAGAACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAA 167813 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || ||||||||||| || || |||||||| ||||||||||| | || Sbjct 167812 AGGGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGG 167753 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | ||| || || || || || Sbjct 167752 ATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACT 167693 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || |||||||| |||| ||||| || || ||||||||| Sbjct 167692 TCTAAGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCATT 167645 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || |||||||| | ||| |||||||| | ||||||||| || Sbjct 166048 CCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGAA 165989 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || ||||||||||| || ||||| ||||| || |||||||| | || Sbjct 165988 AGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 165929 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | | | |||||| | ||| || Sbjct 165928 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGCTCAACT 165869 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || | |||||| || || || |||||| Sbjct 165868 TCCAATGTAATAGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCATT 165821 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| ||||||||||||| || || ||||| | |||||||| || Sbjct 166276 CCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 166217 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| || |||||||| || ||||| || ||||| |||||||| | || Sbjct 166216 AGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAGGA 166157 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | ||| || || | ||| || Sbjct 166156 ATTCCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACT 166097 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| || | ||||| ||||| || |||||| Sbjct 166096 TCCAAAGTAATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCATT 166049 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| |||| ||| |||||||| | ||||||||| || Sbjct 167188 CCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAGAA 167129 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | |||||| ||||| || || || || |||||||| | || Sbjct 167128 AGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 167069 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | ||| || || | ||| || Sbjct 167068 ATTCCTTCCTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACT 167009 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || | |||||| |||||||| |||||| Sbjct 167008 TCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCATT 166961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| || || ||||| | ||| || || || | |||||||| || Sbjct 166504 CCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAA 166445 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || |||||||| || ||||| || ||||| |||||||| | || Sbjct 166444 AGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGTGGG 166385 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | ||| |||||| | ||||| Sbjct 166384 ATTCCTTCCTTATCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTTCGACT 166325 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || |||| || || ||||||||||||||| Sbjct 166324 TCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCATT 166277 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| ||| ||||| ||||||| ||| || ||||| | || ||||| || Sbjct 166732 CCACCTCGCAATCTCAACACTAAATGGAGGGTGGATTCTTTTTGGATGTTATAATCCGAA 166673 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || | |||||| ||||| || || || || ||||| || | || Sbjct 166672 AGAGTACGTCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGGTCTGGTGGG 166613 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | ||| || || || ||||| Sbjct 166612 ATCCCTTCTTTATCCTGGATTTTAGCTTTAACGTTTTCAATAGTATCAGAAGGTTCGACT 166553 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || |||| || || ||||||||||||||| Sbjct 166552 TCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCATT 166505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || || ||||||| ||| || ||||| | ||||| || || Sbjct 166960 CCACCTCTCAATCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAA 166901 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | |||||| || ||||| || || || |||||||| | || Sbjct 166900 AGAGTACGCCCATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 166841 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||| || | ||| ||| || || || || Sbjct 166840 ATTCCTTCTTTATCCTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGTTCAACT 166781 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||||| || || |||||||||||||| Sbjct 166780 TCCAAGGTGATGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 166734 >seq569 Length=200630 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | |||||||| || | || |||||||| | ||||| ||||| Sbjct 134620 GCCACCACGAAGACGCAACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGA 134561 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || ||| | || |||| |||||| || || || || || || |||||||| | || Sbjct 134560 AAGAGTGCGTCCATCTTCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 134501 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || ||| | ||||| | | | || ||| | || || Sbjct 134500 GATACCCTCCTTGTCTTGGATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAAC 134441 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| |||||||| |||||||| |||||||||||| Sbjct 134440 CTCGAGGGTGATGGTTTTACCGGTTAGGGTTTTCACGAAAATTTGCATT 134392 >seq412 Length=275653 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| ||||| || ||||| | || || || || | ||| ||||| || Sbjct 83015 CCACCACGCAATCTTAGGACTAAATGCAACGTTGATTCTTTCTGAATATTATAATCAGAA 82956 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | |||||| || || ||||| || ||||||||||| | || Sbjct 82955 AGAGTGCGCCCATCTTCGAGTTGTTTTCCCGCGAAAATTAAACGCTGTTGATCCGGTGGG 82896 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| | ||||| | | | || ||| || |||||| Sbjct 82895 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCGGAAGGCTCGACC 82836 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | ||||| || || || |||| |||||| ||||| || ||||| || Sbjct 82835 TCAAGAGTTATGGTCTTGCCAGTTAAAGTTTTAACAAAGATCTGCATATT 82786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381336706514466