Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1284 571 8e-158 seq1159 372 4e-98 seq104 89.7 7e-13 >seq1284 Length=72753 Score = 571 bits (632), Expect = 8e-158 Identities = 1256/1874 (67%), Gaps = 33/1874 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || |||||||| | ||||| |||||| | || ||| ||||| |||||||| || Sbjct 54605 GTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATAATACATTCCTGTTTTAAGT 54546 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | | ||| ||||||||||| || |||| ||| || | || | ||||| | Sbjct 54545 CCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGAGTAAGTCGGTTTGGCTACG 54486 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 | || ||| | || || |||||||||||||| || || | | || || |||||| Sbjct 54485 TAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCGAGCCGCGGCTTGATTTATG 54426 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || | || ||||||||||| |||||||||| | || | ||| || || | Sbjct 54425 ATGCATTTATTTGAAATTTCCCAAACTGTTTTATAAATTTCTTTTAAATCGTCAGGGA-- 54368 Query 71041 TTTG-----TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 |||| | || ||||| || || | || |||||| || |||||| || |||| Sbjct 54367 TTTGGGGGATGTTTTGAATTGAGCCGCGATTTGCAATTATTTGATTTTTCATTAAATCAT 54308 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155 ||| | || ||||||||| |||| | | || ||||||| ||||| || || | Sbjct 54307 CCCAAAGCCCCCTTTCGGTTAAATCTCTTAATAAGTGGTGATTAACAACTTGGAAATCCC 54248 Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTC 71215 |||| | |||||| || || |||||||| || || ||||| | || || ||||||| Sbjct 54247 CAGAAAGTACTCTTCGCGTATAAATATTCGATGTGTAAGGTTCAAAAGATTCGTTATTTC 54188 Query 71216 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | | ||||||||| ||||| || || ||||| || || | | || | |||||| | | Sbjct 54187 CTAGAATTTGAGCTGTTGAAGCTGTTGGCATTGGGGCTAAGAGTAAAGAATTTCTTATTC 54128 Query 71276 CATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNN 71335 | ||| ||||| ||||||| || ||||| ||| | ||| ||||| ||| Sbjct 54127 CGTGTTTATTAATTTTTTCTTTTAATTCTTTCCAATCCCATAAATCAGATGGAGTAACAT 54068 Query 71336 NNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATG 71395 || || |||||| | || ||| || || || || Sbjct 54067 TCCACATATCGTATTGCAAGATTCCTTTACTAACAGGGGAACCTTGGTAAGTTTCATAAA 54008 Query 71396 GTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGA 71455 || ||||||||||||| ||||||||| || ||||| || || ||||||| ||||| | Sbjct 54007 CCCCGTCTTTTTCGGCTAATTCACAACTAGCTTCTAAGGCACCGTAATAAAGCGTTTCAA 53948 Query 71456 AAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAA 71515 | || | | || | | || ||||| ||||||||||| || | | | ||||| Sbjct 53947 AGATTTGCACGTTTAATTTATGGGCTTCGGGGCTATCAAAGGGGAGTCTCATCAAAATAA 53888 Query 71516 ACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTT 71575 | || |||||||||||||||| ||||| || || || | || | ||||| || ||| Sbjct 53887 AAGCATCTGCTAATCCTTGAATACCAATTCCAATGGGGCGATGGCGTTTATTGGACGTTT 53828 Query 71576 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTA 71635 |||||||||| | || |||||||||| ||| |||| |||||| | |||| | || | Sbjct 53827 CAGCTTCTGGGAGTGGGTAATAATTAACATCGATAACTTTATTTAAATTTTTTGTTACAA 53768 Query 71636 CTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATC---TATTACAAACA 71689 |||| || |||| ||| ||||||||| | ||| || | | || ||| Sbjct 53767 CTTTTGTGACGATTTTTAATTTTTCAAAATCAAAACTTTTCCTGTCGGGTTTAACGAACT 53708 Query 71690 CGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTA 71749 ||| | |||| ||||| | ||||||||| || | |||| || | | |||| | Sbjct 53707 GGTTAACCGCAATTGATGCTAAATTACAAACTGCGATTTCATCAGGAGATGTGTATTCAA 53648 Query 71750 TAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 71809 | ||||| ||||| | ||| |||| || || || ||||||| |||||| ||||| || Sbjct 53647 TGATTTCGGTGCATAAATTGCTACTTTTTATTGTACCTAAATGTTGTTGGTTACTTTTGC 53588 Query 71810 TGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAA 71869 ||||| || || ||||| | ||| | ||||| ||||||||||| ||||| | || | Sbjct 53587 GATTACAAGCGTCTTTATACAACATATATGGAGTTCCAGTTTCAATTTGAGACACAATTA 53528 Query 71870 TCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCTTTCGTA 71927 | |||||||| | ||| || ||| | | | | ||||| | ||||||| Sbjct 53527 TGGCTTTCCATAATTCTCTGGCGGGTAT--TTGGCGAACAAATTTTTTCCTTTTTTCGTA 53470 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 | | |||||| |||| | || |||||| || ||| || ||||||| || Sbjct 53469 ATTTTCGTATAATTCCACGAATTTTTCCCCCCAACAATCAGATAAACCGGGACATTGATG 53410 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 |||||||| | |||||| | ||| || | || ||||||||||| | ||||||||| Sbjct 53409 AGGACACATTAGCGACCACATTGAATCTTCCTCGACGCGTTTCATAAATAAATCAGGAAT 53350 Query 72048 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 72107 ||| | ||| ||||| |||||| | ||| || || || ||||| ||||| | Sbjct 53349 CCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTATTTTTTTTTAA 53290 Query 72108 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 || | || | | || ||| | |||||||||||| || || || || | |||| || Sbjct 53289 ATTTAAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAAACGCTCCAGG 53230 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 | ||| || || || ||||| | |||| ||| || |||||| |||| | |||||||| Sbjct 53229 TCTTTTATTACCCCCTTGATCGACATATCGAGCTGTATTATTAAAAACCCGTAACATTGG 53170 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG-GCACGAATAT 72286 | | ||| || || |||||| || || | ||| | | | | || || ||||||| Sbjct 53169 TACTAAACCGTTTGAAATACCATTAGTTCCAGCAATA-ATCGTGCCTTGTGCTCGAATAT 53111 Query 72287 TGCTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 72342 | || || | || ||||| || || |||| || || | || ||| || Sbjct 53110 T----ATGGACGTTAACTCCAATTCCTCCCGCACTTTTTGATATAATAGCACATTGTGAG 53055 Query 72343 A-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 | || | | | | ||||| | || ||| ||| ||| | | || ||||| || Sbjct 53054 ATACAT-TTAAAAATGCCTTGGATTGAATCCTCCGGCATCATTACTAAGAAACATGACGA 52996 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 |||||| | ||| || | || |||||| || ||| ||||| ||||| | || Sbjct 52995 CATTTGTGGGCGAGGTGTCGCTGCGGCAAATAAAGTCGGACTCGCGTGAGTAAAATACTT 52936 Query 72462 TTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCT 72519 ||||||| ||| |||||| || |||||||||||||| || || || | || || || Sbjct 52935 CTCAGACATGTA-ATTGTAAGTTTCAATAGCTGATTCAATGTCTTCACCG-TGAATCCCA 52878 Query 72520 ACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 72579 || || || |||||||||||||| || || | |||| | || || || ||||| | Sbjct 52877 ACGGCCACGCGCATTAACATATGTTGGGGACGTTCAGCAATTTTTCCGTTGATTTTTAGG 52818 Query 72580 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 72639 | || || ||| | ||||||||||||||||| || ||||| || || || |||||| Sbjct 52817 AGATATGAACGTTCGAGTGTTTTAAAACCAAAATAATTATATGAGAAATCACGATCGTAA 52758 Query 72640 ATAATAACCGAATT 72653 || ||| ||||| Sbjct 52757 ATGATACAAGAATT 52744 >seq1159 Length=103958 Score = 372 bits (412), Expect = 4e-98 Identities = 618/889 (70%), Gaps = 5/889 (1%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||||||||| || || || ||| || || |||||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 | ||| |||||||| ||||| || ||| || | ||||| | | || | ||||| | Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 || | ||| || | || || || || ||| | | |||||||| || || | Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 |||| |||||||| |||| | |||||| |||||||| ||||| || ||||| Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATGCGA 42071 | ||| ||| | ||| | ||||| || | |||||| ||||| || | Sbjct 50071 ACTCGTTATACGTTCCTTTGACGGCTTTTG-AATAAGATATGTAAACAATAAACAAGCAA 50129 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | ||| | || | ||| ||||| | ||||||||| || |||||||| | ||||||| Sbjct 50130 ATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGGCA 50189 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 ||| || |||||||| | |||||| |||| ||||| ||| |||||||| || || | Sbjct 50190 TTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACCCT 50249 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACT 42248 | || |||||||| |||| | | || ||| || || | | | ||||| | Sbjct 50250 CAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCAAT 50309 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 || ||||||||| || |||||||| |||||||| | |||||| ||||| ||||| | | Sbjct 50310 TTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAAAA 50369 Query 42309 AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAAT 42368 | | ||||| || ||| || ||| || || || || | || |||||||| || | Sbjct 50370 ATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGAGT 50429 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 |||| |||||||| || || ||||| ||||| ||||| | || || || ||||| |||| Sbjct 50430 GAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCTGAACTT 50489 Query 42429 CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 || || ||| |||||| ||||||||||||| || ||||| ||| || |||||||| | Sbjct 50490 CTTGACTAAAACGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAAGG 50549 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATAT 42548 | || ||||| ||||||| ||||| |||||| | | ||||| ||||| || Sbjct 50550 CTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGAGAT 50609 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 |||| || | |||||||||||| ||||||||||| ||||| |||| ||| || | Sbjct 50610 CTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTATTTCG 50669 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| |||||| |||| | ||| || |||| || || | ||||||| Sbjct 50670 CCCAAATATCAGGATACTCAATGGGAAAAACGACGAAACGTCTTGGATT 50718 >seq104 Length=333490 Score = 89.7 bits (98), Expect = 7e-13 Identities = 272/402 (68%), Gaps = 25/402 (6%) Strand=Plus/Plus Query 165702 TATGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACGA-CGA 165760 ||||||| || ||| ||||| || ||| | | |||||||||||||||||||| | | Sbjct 112952 TATGGTACTGGTAAAAAAGGTGGAATGATGTCGATTTTTCTAATGGGTTGTTACGATCCA 113011 Query 165761 TGAATCCGGTAAATGGAAG-ACGGTAACTAAATGTTCC----GGCCACGATGATAATACG 165815 |||| | || | || || || || |||| || ||||||||||| || Sbjct 113012 --AATCGTGATTATTTTTGTACTGTTACCAAG-GTTCATACAGGACACGATGATAAAACA 113068 Query 165816 TTA--AGGGTTTTACAAGACCAATTAAAGATGGTTAAAATTAACAAGGATCCCaaaaaaa 165873 ||| | || || ||| | || | | ||| | ||||| | ||| ||| |||| Sbjct 113069 TTAGAACGGCTT--CAAAATGAACTCGATATGATAAAAATAAGTGGAGATATCAATAAAA 113126 Query 165874 TTCCAGTGTGGTTG-GTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGATCC 165931 | || ||||| || || | ||| | || || |||||||| |||| | | || || Sbjct 113127 TACCTAAATGGTTACGTTGT--ACGAAAACAATGATCCCCGATTTAGTAGCAAAAGACCC 113184 Query 165932 --AAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACGTCTTCA--AAGTCAC 165987 ||||| | | | | | ||||||||| | || || || || || || || |||| | Sbjct 113185 CAAAAACCAAC-CTGTT-TGGGAAATTACGGGCGCGGAATTCAC-TCAACACGAAGTT-C 113240 Query 165988 ATACAGCAAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 166047 | || ||||||||||| || ||| | || || || |||| | |||| ||||||| || | Sbjct 113241 ACACCGCAAATGGAATTTCAATTCGTTTCCCAAGGGTTACAAAGATTCGAGAAGAAAAGA 113300 Query 166048 CGTGGAAAGAATCTACTCATCTAAACGATTTAGTAAACTTGA 166089 | |||||||| | ||| || |||| || |||| ||| |||| Sbjct 113301 CTTGGAAAGAGGCAACTAATTTAAATGAATTAGAAAAATTGA 113342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671079829348520