Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1159 132 5e-26 seq241 122 9e-23 seq569 114 1e-20 seq412 82.4 8e-11 >seq1159 Length=103958 Score = 132 bits (146), Expect = 5e-26 Identities = 239/348 (69%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 50226 TTTTTACACATTTCAAGCGGCCATGGAAAATGTTCACACACAAATGTACGGAACGTTAAT 50285 ||||||| |||||| || || |||||| ||||| | |||||||| | | |||||| Sbjct 50464 TTTTTACGGTTTTCAAATTGCTATTGAAAATATTCACTCTGAAATGTACAGCATGTTAAT 50405 Query 50286 TATTACATTGATTCCGGACAAAAAGCAACAAGACTTAATACTCAACGCTTTCGATAATAT 50345 | || | ||| | || ||| ||| |||| || || | ||||| |||| | | Sbjct 50404 TGAAACTTATATTTCTGATCCAAAACAAAAAGAATTTTTATTTAACGCCATCGAAACGCT 50345 Query 50346 TTCGTGTGTGCGTAAAAAGGACG---ATTGGGCATTGAAATGGACTaaaaacaaaaaaCT 50402 | | ||||| ||||||| | | ||||||| || || |||| || | ||||| Sbjct 50344 TCCTTGTGT---TAAAAAGAAAGCTGATTGGGCTTTAAATTGGATTAGTAGTAAAAACGC 50288 Query 50403 TACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAG 50462 ||||| | ||||||||||| || ||||| ||||| ||| | || ||||| || || Sbjct 50287 GACTTTTGGGGAACGTTTAGTTGCTTTTGCGGCCGTTGAGGGTATTTTCTTTTCGGGAAG 50228 Query 50463 CTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAA 50522 |||||||| || |||| | |||| || |||||||||| | |||||| || Sbjct 50227 TTTTGCAGCTATTTTTTGGTTGAAAAAGCGGGGTTTAATGCCCGGTTTAACGTTTTCTAA 50168 Query 50523 CGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTT 50570 || || ||||||||||| ||||| | || || ||||| ||||| Sbjct 50167 TGAATTAATTTCGCGCGATGAAGGTTTACATTACGAATTTGCTTGTTT 50120 >seq241 Length=949647 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | ||| || ||||| | || ||||||||||| ||||||||||| Sbjct 166276 CCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 166217 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||||||||||||| |||| | ||||| ||||| ||||| Sbjct 166216 AGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAGGA 166157 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||| | | ||| | || || | || || ||| Sbjct 166156 ATTCCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACT 166097 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||||||||| || || || ||||| Sbjct 166096 TCCAAAGTAATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCAT 166050 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||| |||||||| | || ||||||||||| ||||||||||| Sbjct 167644 CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGAA 167585 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||||||| || |||| | |||||| ||||| || || Sbjct 167584 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGG 167525 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| ||| | | ||| | || || | ||||| ||| Sbjct 167524 ATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCACT 167465 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || |||||||||||||| |||||||| Sbjct 167464 TCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167418 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| |||||||| | || ||||||||||| |||||||| || Sbjct 166960 CCACCTCTCAATCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAA 166901 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| ||||||||||||||| |||| | |||||| ||||| ||||| Sbjct 166900 AGAGTACGCCCATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 166841 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || || ||| | | ||| | || || | ||||| ||| Sbjct 166840 ATTCCTTCTTTATCCTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGTTCAACT 166781 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || ||||| || || || || || ||||||||| Sbjct 166780 TCCAAGGTGATGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCATA 166733 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | ||| |||||||||| || |||||||| || ||||||||||| Sbjct 166504 CCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAA 166445 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| | ||||||||||||| |||| | ||||| ||||| || || Sbjct 166444 AGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGTGGG 166385 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || ||| | | ||| | ||||| | ||||| ||| Sbjct 166384 ATTCCTTCCTTATCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTTCGACT 166325 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || || || || || |||||||| Sbjct 166324 TCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 166278 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| || | ||||||||| | || ||||| ||||| || |||||||| Sbjct 167872 CCACCACGTAGGCGAAGAACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAA 167813 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | |||||||||||| | |||| ||| || ||||| || || Sbjct 167812 AGGGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGG 167754 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| ||| | | ||| | || || | ||||| || Sbjct 167753 GATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCAC 167694 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || || || |||||||||||||| |||||||| Sbjct 167693 TTCTAAGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167646 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||| |||||||| | || ||||||||||| ||||||||||| Sbjct 167416 CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 167357 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||||||||| || |||||| |||||| ||||| || || Sbjct 167356 AGAGTACGACCATCTTCAAGTTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 167297 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| ||| | | || | || || | || || ||| Sbjct 167296 ATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTATCAGATGGCTCAACT 167237 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || ||||| ||||| || || || ||||| Sbjct 167236 TCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 167190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| || | ||| |||||||| | || ||||||||||| ||||| ||||| Sbjct 166732 CCACCTCGCAATCTCAACACTAAATGGAGGGTGGATTCTTTTTGGATGTTATAATCCGAA 166673 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||||||||| || |||| | |||||| || || || || Sbjct 166672 AGAGTACGTCCA-TCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGGTCTGGTGG 166614 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || ||||| ||| | | ||| | || || | ||||| || Sbjct 166613 GATCCCTTCTTTATCCTGGATTTTAGCTTTAACGTTTTCAATAGTATCAGAAGGTTCGAC 166554 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || || || || || || || || |||||||| Sbjct 166553 TTCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 166506 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | |||||||| ||||| || |||||||| Sbjct 167188 CCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAGAA 167129 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| ||||||||||| || |||| | |||||| ||||| ||||| Sbjct 167128 AGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 167069 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||| ||| | | ||| | || || | || || ||| Sbjct 167068 ATTCCTTCCTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACT 167009 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||| ||||| || || || ||||| Sbjct 167008 TCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 166962 >seq569 Length=200630 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || || |||| || ||||| ||||| |||||||| ||| Sbjct 134620 GCCACCACGAAGACGCAACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGA 134561 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | |||| || | ||||| |||||||||||||| |||| | |||||| ||||| || | Sbjct 134560 AAGAGTGCGTCCA-TCTTCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTG 134502 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || || ||||| |||||| || | | ||| | || || | |||||| | Sbjct 134501 GGATACCCTCCTTGTCTTGGATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAA 134442 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 143187 | || | || | || || ||||| | ||||| ||||| |||||||| || Sbjct 134441 CCTCGAGGGTGATGGTTTTACCGGTTAGGGTTTTCACGAAAATTTGCATTGC 134390 >seq412 Length=275653 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | || |||||||| || || || ||||| | |||| | |||||| Sbjct 82997 ACTAAATGCAACGTTGATTCTTTCTGAATATTATAATCAGAAAGAGTGCGCCCATCTTCG 82938 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||| || || | || | ||| || ||||| || || || || |||||||| Sbjct 82937 AGTTGTTTTCCCGCGAAAATTAAACGCTGTTGATCCGGTGGGATTCCCTCTTTGTCTTGG 82878 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | ||| | || || | || || || |||| ||| | |||||| Sbjct 82877 ATCTTAGCCTTGACATTTTCGATGGTATCGGAAGGCTCGACCTCAAGAGTTATGGTCTTG 82818 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || ||||| || || || |||||| Sbjct 82817 CCAGTTAAAGTTTTAACAAAGATCTGCATA 82788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506969548238640