Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1159 342 4e-89
>seq1159
Length=103958
Score = 342 bits (378), Expect = 4e-89
Identities = 607/878 (69%), Gaps = 8/878 (1%)
Strand=Plus/Plus
Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918
|||||| || || | ||| |||| ||||| || || || || || || |||
Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890
Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978
| ||||||||| || ||||| | ||| || |||||| ||| || | ||| |||
Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
|| | || ||||||||||| |||||||| |||||||| || ||||| || |||||
Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098
| || || | ||| || |||||||| | | ||| || ||||| || ||| || ||
Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070
Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTG--ATA-GATGCTTAAACATCATACATGC 13155
||| | ||||||| | || || ||| ||| ||| |||||| | ||| ||
Sbjct 50071 A-CTCGTTATACGTTCCTT--TGACGGCTTTTGAATAAGATATGTAAACAATAAACAAGC 50127
Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215
||| || | || || |||||||| | |||| || || ||||| |||| ||| ||
Sbjct 50128 AAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGG 50187
Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275
||| | || || ||||| | |||||| ||||| ||||| |||||||| || || ||
Sbjct 50188 CATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACC 50247
Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335
||||| || ||||| || | || | ||| ||| | || |||||||| |||||
Sbjct 50248 CTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCA 50307
Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395
||| ||||| | ||||| | |||||| || | |||| || |||||||||||
Sbjct 50308 ATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAA 50367
Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455
| | | ||||| || || |||||||||| || || || | ||| |||||||| ||
Sbjct 50368 AAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGA 50427
Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515
||||||||||| || || ||||| ||||| |||||||| | || || | |||||||||
Sbjct 50428 GTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCTGAAC 50487
Query 13516 TTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574
||| || ||||| | ||| |||| |||||||| || || || ||| |||||||||||
Sbjct 50488 TTCTTGACTAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAA 50546
Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634
| || | | || ||||| | |||||| || | || || ||||| |
Sbjct 50547 AGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGA 50606
Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACA 13694
|||||| || | |||||| || ||| ||||||||| ||||| | |||| || ||
Sbjct 50607 GATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTATT 50666
Query 13695 TCATCCATATATCCTTATAAACAATGGGAAACACAACG 13732
|| ||| ||||| ||| |||||||||| || |||
Sbjct 50667 TCGCCCAAATATCAGGATACTCAATGGGAAAAACGACG 50704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430945227363954
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |