Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1159 342 4e-89 >seq1159 Length=103958 Score = 342 bits (378), Expect = 4e-89 Identities = 607/878 (69%), Gaps = 8/878 (1%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| || || | ||| |||| ||||| || || || || || || ||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 | ||||||||| || ||||| | ||| || |||||| ||| || | ||| ||| Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 || | || ||||||||||| |||||||| |||||||| || ||||| || ||||| Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | || || | ||| || |||||||| | | ||| || ||||| || ||| || || Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTG--ATA-GATGCTTAAACATCATACATGC 13155 ||| | ||||||| | || || ||| ||| ||| |||||| | ||| || Sbjct 50071 A-CTCGTTATACGTTCCTT--TGACGGCTTTTGAATAAGATATGTAAACAATAAACAAGC 50127 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| || | || || |||||||| | |||| || || ||||| |||| ||| || Sbjct 50128 AAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGG 50187 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| | || || ||||| | |||||| ||||| ||||| |||||||| || || || Sbjct 50188 CATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACC 50247 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 ||||| || ||||| || | || | ||| ||| | || |||||||| ||||| Sbjct 50248 CTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCA 50307 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 ||| ||||| | ||||| | |||||| || | |||| || ||||||||||| Sbjct 50308 ATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAA 50367 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 | | | ||||| || || |||||||||| || || || | ||| |||||||| || Sbjct 50368 AAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGA 50427 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||||||||||| || || ||||| ||||| |||||||| | || || | ||||||||| Sbjct 50428 GTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCTGAAC 50487 Query 13516 TTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 ||| || ||||| | ||| |||| |||||||| || || || ||| ||||||||||| Sbjct 50488 TTCTTGACTAAAA-CGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAA 50546 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634 | || | | || ||||| | |||||| || | || || ||||| | Sbjct 50547 AGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGATTGA 50606 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACA 13694 |||||| || | |||||| || ||| ||||||||| ||||| | |||| || || Sbjct 50607 GATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTATT 50666 Query 13695 TCATCCATATATCCTTATAAACAATGGGAAACACAACG 13732 || ||| ||||| ||| |||||||||| || ||| Sbjct 50667 TCGCCCAAATATCAGGATACTCAATGGGAAAAACGACG 50704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430945227363954