Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1159 288 2e-72 seq412 194 4e-44 seq241 178 3e-39 seq62 105 2e-17 >seq1159 Length=103958 Score = 288 bits (318), Expect = 2e-72 Identities = 425/591 (72%), Gaps = 11/591 (2%) Strand=Plus/Minus Query 268712 TTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGG 268771 ||||| || || || |||||| ||| || ||||||||||| | ||||| |||||| Sbjct 50697 TTTCCCATTGAGTATCCTGATATTTGGGCGAAATACAAACAGGCGGAAGCTTCATTTTGG 50638 Query 268772 ACTGTAGAAGAAGTAGATCTGTCTTATGA-CTTAATAGATTGGAAAAATTTAAAACCAGA 268830 || |||||||||||||| || | || || ||| ||||| ||| |||| | | | Sbjct 50637 ACCACTGAAGAAGTAGATCTTTCGAAAGATCTCAATC-ATTGGCAAACATTAAC-CGATA 50580 Query 268831 A-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTA 268889 | ||| | ||||| || || || | || |||||||| | | |||||| || || | Sbjct 50579 ACGAACGTCATTTTATCTCCCATGTTTTAGCCTTTTTTGCTGCTTCTGATGGAATTGTAA 50520 Query 268890 ACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTT 268948 |||||||| |||| || | ||| | ||||||| || ||| | | ||||| | |||||| Sbjct 50519 ACGAAAATTTAGTTGA-ACGTTTTAGTCAAGAAGTTCAGGTAACGGAAGCACGTTGTTTT 50461 Query 268949 TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGAT 269008 ||||| || || || ||||| ||||||||||| || || |||||||| | ||||| || Sbjct 50460 TACGGTTTTCAAATTGCTATTGAAAATATTCACTCTGAAATGTACAGCATGTTAATTGAA 50401 Query 269009 ACTTATATAGATGATA-ACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGA 269067 |||||||| |||| | ||| ||||||| ||||| | || ||| | Sbjct 50400 ACTTATATTTCTGATCCAAAACAAAAAGAATTTT-TATTTAACGCCATCGAAACGCTTCC 50342 Query 269068 CTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAG---CGCGCCTTA 269124 ||||| | ||| ||| |||| |||||| | || ||||| | || |||| ||| Sbjct 50341 TTGTGTTAAAAAGAAAGCTGATTGGGCTTTAAATTGGATTAGTAGTAAAAACGCGACTTT 50282 Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGC 269184 || ||| | |||||||||||||| || || || ||||| ||||||||||| |||||| Sbjct 50281 TGGGGAACGTTTAGTTGCTTTTGCGGCCGTTGAGGGTATTTTCTTTTCGGGAAGTTTTGC 50222 Query 269185 CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATT 269244 ||||| ||||||||||| || | || | ||||| || ||||| || ||||| ||||| Sbjct 50221 AGCTATTTTTTGGTTGAAAAAGCGGGGTTTAATGCCCGGTTTAACGTTTTCTAATGAATT 50162 Query 269245 GATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 || | || ||||||||||| | ||| || ||||||||||| ||||| Sbjct 50161 AATTTCGCGCGATGAAGGTTTACATTACGAATTTGCTTGTTTATTGTTTAC 50111 >seq412 Length=275653 Score = 194 bits (214), Expect = 4e-44 Identities = 177/222 (80%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || |||| ||| || || |||||||||||||||||||| ||||| ||||| | || Sbjct 83003 CTTAGGACTAAATGCAACGTTGATTCTTTCTGAATATTATAATCAGAAAGAGTGCGCCCA 82944 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| ||||||||||| || ||||||| | ||||||||| || || ||||| ||||| Sbjct 82943 TCTTCGAGTTGTTTTCCCGCGAAAATTAAACGCTGTTGATCCGGTGGGATTCCCTCTTTG 82884 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || ||||| || || |||||||| | ||||||| ||| || ||||| || || || Sbjct 82883 TCTTGGATCTTAGCCTTGACATTTTCGATGGTATCGGAAGGCTCGACCTCAAGAGTTATG 82824 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGTG 104565 ||||| ||||| | ||||| ||||| |||||||| |||||| Sbjct 82823 GTCTTGCCAGTTAAAGTTTTAACAAAGATCTGCATATTTGTG 82782 >seq241 Length=949647 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | || | ||| | || |||||||| || || || || ||| Sbjct 166279 ATTCCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCA 166220 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||||| |||||| |||||||| |||| | |||||||| ||| Sbjct 166219 GAAAGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGA 166160 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| || || ||||| |||||||| | |||||| || || Sbjct 166159 GGAATTCCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCA 166100 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | |||||||| || ||||| | |||||| ||||| ||||||||| Sbjct 166099 ACTTCCAAAGTAATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCATT 166049 Score = 174 bits (192), Expect = 4e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | ||| | ||| | || ||||| || || ||||| || ||| Sbjct 166051 ATTCCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCA 165992 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | ||||||||||||||| || | | |||||||| || Sbjct 165991 GAAAGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGT 165932 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| |||||||| ||||| |||||||||| ||| ||| || || Sbjct 165931 GGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGCTCA 165872 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | |||||||||||| ||||| | ||||| || || ||||||||| Sbjct 165871 ACTTCCAATGTAATAGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCATT 165821 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | ||||| ||| | || |||||||| || || || |||||| Sbjct 166963 ATTCCACCTCTCAATCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCA 166904 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| |||||||| |||||||| |||| | |||||||| ||| Sbjct 166903 GAAAGAGTACGCCCATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGA 166844 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| ||||| ||||| |||||||| | ||||| |||||| Sbjct 166843 GGAATTCCTTCTTTATCCTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGTTCA 166784 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || ||||| || | || || ||||| || ||||| Sbjct 166783 ACTTCCAAGGTGATGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 166734 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | ||||| ||| | || ||||||||||| || || || ||| Sbjct 166507 ATTCCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCA 166448 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||||| |||||| |||||||| |||| | |||||||| || Sbjct 166447 GAAAGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGT 166388 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| || ||||| ||||| |||||||| | ||| ||| ||||| Sbjct 166387 GGGATTCCTTCCTTATCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTTCG 166328 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||| || || |||||||| | || || ||||| || |||||| Sbjct 166327 ACTTCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCATT 166277 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || |||||||| || || ||||| || || ||||| | || ||||| Sbjct 166714 ACTAAATGGAGGGTGGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGTCCATCTTCA 166655 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| || || || |||| | ||||| || || || || |||||||||||||| Sbjct 166654 AGTTGTTTACCGGCGAAGATTAAACGTTGTTGGTCTGGTGGGATCCCTTCTTTATCCTGG 166595 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| || ||||| | ||||| |||||| || || | ||| || || ||| Sbjct 166594 ATTTTAGCTTTAACGTTTTCAATAGTATCAGAAGGTTCGACTTCCAATGTGATGGTTTTA 166535 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | || || ||||| || |||||| Sbjct 166534 CCAGTTAAGGTCTTAACAAAAATTTGCATT 166505 >seq62 Length=648032 Score = 105 bits (116), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 |||||| ||| || | ||| | || |||| || | ||||||| || | ||||| Sbjct 445762 TTATTT--TCCACCACGTAGGCGAATAACTAAATACAGAGTAGATTTCTTATAGATATTG 445705 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || || || || || | || ||||| | || ||| | | ||||||| | ||||||| Sbjct 445704 TAATCTGAAAGGGTACGTCCATCTTCCAATTCTTTACGATGGAAAATTAAACGCTGTTGA 445645 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || || | ||| || || |||||||| ||||||||||| | | ||||| || Sbjct 445644 TCCGGTGGAATCCTTTCCTTGTCTTGAATCTTAACTTTTACATTTCCAATAGTATCAGTA 445585 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || | || || || || ||||| | ||||||| || || |||||| Sbjct 445584 GGTTCCACTTCCAAGGTGATGGTTTTTCCAGTTAAACTTTTTACGAAGATTTGCATT 445528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151293998029516