Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq295 221 1e-52 seq979 116 4e-21 seq342 116 4e-21 seq8 95.1 1e-14 >seq295 Length=373786 Score = 221 bits (244), Expect = 1e-52 Identities = 365/517 (71%), Gaps = 20/517 (4%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 |||||||| | ||| || | ||| |||||| || | ||||||||| || || | ||| Sbjct 5790 TGAGCAATCATATAAGTAAGTAAAGCATAACTGGCGATATTAAAAGGAACTCCAAGACCC 5731 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTATAG----CATAAAA 7013 ||||| ||||| | |||||| || |||||| | || || | | ||||||| Sbjct 5730 ATATCCGCTGAACGTTGATATAATAAACAAGAAAG----TTCTCCTTCGGCTACATAAAA 5675 Query 7014 TTGACACAATACA-TGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAG 7072 |||| || | ||| ||||| |||||||| | | | |||||| || ||||||| Sbjct 5674 TTGA-ACTAAACAATGACAAGGAGGTAATGCCATTTTAGGGATATCAATGGGGTTCCAAG 5616 Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGT- 7131 || ||| | || | || |||| |||| ||| |||||||| | ||| | || | Sbjct 5615 CACACATAATTATCCTTCGATCAGTTGG-TTTATTTTTAATAGTATTAATAACATCCATT 5557 Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAA 7191 |||||||| ||||| | | ||||| ||| || ||| ||| | ||||||| || Sbjct 5556 AATTGATCAATACCTTTATTAGTATAATCAGTGTGCATATTACCATATTCAGCTCCATAA 5497 Query 7192 TGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCT 7251 |||||||||||||| ||||||||||| || ||||| ||||||||||||| | | || || Sbjct 5496 TGTCTCCATTGAAAACCATAAATAGGTCCCAAATCGCCTTCTTCACGATCAGTTAAACC- 5438 Query 7252 AATCGA-TTTAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAGAtttttt 7307 ||| || | ||||| ||| | | | | | || |||||||| ||| ||| || Sbjct 5437 AATTGAGTCTAAAT---ATTCCCTGGTGCTGTTGGGATTCCAAATATTCACATTTTTCTT 5381 Query 7308 tGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCC 7367 || ||||| | || || ||| ||| ||| |||||||||||||||||| |||| || Sbjct 5380 TGCTAAATCTTTAGCGTTGGTACTCCCTCTAATGAACCATAAAAGTTCTTCAACTACACC 5321 Query 7368 ACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404 |||||||| | | |||||| || |||||||| ||| Sbjct 5320 GCGCCAAAAAACGCGTTTTGTTGTTAATAAAGGAAAT 5284 >seq979 Length=53625 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| ||||||||| ||||||| ||||||||| |||| |||||||| ||||||||||| Sbjct 28152 AGGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATT 28211 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGG 164618 ||||| ||| |||| || | ||||| | | || || ||||| |||||||| Sbjct 28212 GATGGCACGACAAATTG-GAAAAATGTTAAATGCTAGAGAACC--AAAAATCGTTAATGG 28268 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 ||| | | || | |||||||| ||||| || ||||| |||||| | | ||| ||| Sbjct 28269 TCCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGC 28328 Query 164679 GGAGGCTGAAGAAGAA 164694 || |||||||| ||| Sbjct 28329 TGAAGCTGAAGAGGAA 28344 >seq342 Length=147665 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| ||||||||| ||||||| ||||||||| |||| |||||||| ||||||||||| Sbjct 42718 AGGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATT 42659 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGG 164618 ||||| ||| |||| || | ||||| | | || || ||||| |||||||| Sbjct 42658 GATGGCACGACAAATTG-GAAAAATGTTAAATGCTAGAGAACC--AAAAATCGTTAATGG 42602 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 ||| | | || | |||||||| ||||| || ||||| |||||| | | ||| ||| Sbjct 42601 TCCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGC 42542 Query 164679 GGAGGCTGAAGAAGAA 164694 || |||||||| ||| Sbjct 42541 TGAAGCTGAAGAGGAA 42526 >seq8 Length=4764940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| || |||| |||||||| ||||||||| | | |||||||| || ||||| || Sbjct 3178134 AATTCCCCAAATTGGTGATAAATTTGCTTCTCGTCACGGACAAAAAGGAACCTGTGGGAT 3178193 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 ||||| |||||||||||||| |||||| || ||| || || ||| |||| || Sbjct 3178194 ACAATATCGACAAGAAGATATGCCGTTTACTTGCGAAGGTTTAACACCTGATATTATAAT 3178253 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 |||||| || ||| ||||| || ||||| Sbjct 3178254 TAACCCCCACGCTATTCCATCGCGTATGAC 3178283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595819287673200