Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq295 221 1e-52
seq979 116 4e-21
seq342 116 4e-21
seq8 95.1 1e-14
>seq295
Length=373786
Score = 221 bits (244), Expect = 1e-52
Identities = 365/517 (71%), Gaps = 20/517 (4%)
Strand=Plus/Minus
Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957
|||||||| | ||| || | ||| |||||| || | ||||||||| || || | |||
Sbjct 5790 TGAGCAATCATATAAGTAAGTAAAGCATAACTGGCGATATTAAAAGGAACTCCAAGACCC 5731
Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTATAG----CATAAAA 7013
||||| ||||| | |||||| || |||||| | || || | | |||||||
Sbjct 5730 ATATCCGCTGAACGTTGATATAATAAACAAGAAAG----TTCTCCTTCGGCTACATAAAA 5675
Query 7014 TTGACACAATACA-TGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAG 7072
|||| || | ||| ||||| |||||||| | | | |||||| || |||||||
Sbjct 5674 TTGA-ACTAAACAATGACAAGGAGGTAATGCCATTTTAGGGATATCAATGGGGTTCCAAG 5616
Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGT- 7131
|| ||| | || | || |||| |||| ||| |||||||| | ||| | || |
Sbjct 5615 CACACATAATTATCCTTCGATCAGTTGG-TTTATTTTTAATAGTATTAATAACATCCATT 5557
Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAA 7191
|||||||| ||||| | | ||||| ||| || ||| ||| | ||||||| ||
Sbjct 5556 AATTGATCAATACCTTTATTAGTATAATCAGTGTGCATATTACCATATTCAGCTCCATAA 5497
Query 7192 TGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCT 7251
|||||||||||||| ||||||||||| || ||||| ||||||||||||| | | || ||
Sbjct 5496 TGTCTCCATTGAAAACCATAAATAGGTCCCAAATCGCCTTCTTCACGATCAGTTAAACC- 5438
Query 7252 AATCGA-TTTAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAGAtttttt 7307
||| || | ||||| ||| | | | | | || |||||||| ||| ||| ||
Sbjct 5437 AATTGAGTCTAAAT---ATTCCCTGGTGCTGTTGGGATTCCAAATATTCACATTTTTCTT 5381
Query 7308 tGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCC 7367
|| ||||| | || || ||| ||| ||| |||||||||||||||||| |||| ||
Sbjct 5380 TGCTAAATCTTTAGCGTTGGTACTCCCTCTAATGAACCATAAAAGTTCTTCAACTACACC 5321
Query 7368 ACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404
|||||||| | | |||||| || |||||||| |||
Sbjct 5320 GCGCCAAAAAACGCGTTTTGTTGTTAATAAAGGAAAT 5284
>seq979
Length=53625
Score = 116 bits (128), Expect = 4e-21
Identities = 145/196 (74%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561
||| ||||||||| ||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 28152 AGGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATT 28211
Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGG 164618
||||| ||| |||| || | ||||| | | || || ||||| ||||||||
Sbjct 28212 GATGGCACGACAAATTG-GAAAAATGTTAAATGCTAGAGAACC--AAAAATCGTTAATGG 28268
Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678
||| | | || | |||||||| ||||| || ||||| |||||| | | ||| |||
Sbjct 28269 TCCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGC 28328
Query 164679 GGAGGCTGAAGAAGAA 164694
|| |||||||| |||
Sbjct 28329 TGAAGCTGAAGAGGAA 28344
>seq342
Length=147665
Score = 116 bits (128), Expect = 4e-21
Identities = 145/196 (74%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561
||| ||||||||| ||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 42718 AGGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATT 42659
Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGG 164618
||||| ||| |||| || | ||||| | | || || ||||| ||||||||
Sbjct 42658 GATGGCACGACAAATTG-GAAAAATGTTAAATGCTAGAGAACC--AAAAATCGTTAATGG 42602
Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678
||| | | || | |||||||| ||||| || ||||| |||||| | | ||| |||
Sbjct 42601 TCCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGC 42542
Query 164679 GGAGGCTGAAGAAGAA 164694
|| |||||||| |||
Sbjct 42541 TGAAGCTGAAGAGGAA 42526
>seq8
Length=4764940
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413
||| || |||| |||||||| ||||||||| | | |||||||| || ||||| ||
Sbjct 3178134 AATTCCCCAAATTGGTGATAAATTTGCTTCTCGTCACGGACAAAAAGGAACCTGTGGGAT 3178193
Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473
||||| |||||||||||||| |||||| || ||| || || ||| |||| ||
Sbjct 3178194 ACAATATCGACAAGAAGATATGCCGTTTACTTGCGAAGGTTTAACACCTGATATTATAAT 3178253
Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503
|||||| || ||| ||||| || |||||
Sbjct 3178254 TAACCCCCACGCTATTCCATCGCGTATGAC 3178283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595819287673200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |