Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3773 168 1e-37 seq2316 161 2e-35 seq366 116 6e-22 >seq3773 Length=2876 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||||||||| || || Sbjct 858 CGCCAAGCGCCATCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCGAT 917 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 918 CCGTCGCCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 977 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||| Sbjct 978 CCGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGA 1037 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| ||||||| || | || ||||| || Sbjct 1038 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTCGTCTACGCCCTCAAGCGTCAGGG 1097 Query 16672 CCG 16674 ||| Sbjct 1098 CCG 1100 >seq2316 Length=5934 Score = 161 bits (178), Expect = 2e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||||| || ||||||||||| ||||||||||| || || Sbjct 5682 GCCAAGCGTCACCGCAAGGTGCTTCGCGACAACATCCAAGGCATCACCAAGCCTGCCATT 5623 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || ||||||||||| |||||||| |||| || | |||| || |||| | Sbjct 5622 CGCCGTCTCGCCCGTCGTGGTGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACT 5563 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||||||||||| ||| ||| || | |||||| || ||| |||| Sbjct 5562 CGCGGCGTCCTCAAGATCTTCCTTGAGAACGTCATTCGTGATGCCGTCACCTACTGCGAG 5503 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || ||||| || Sbjct 5502 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGGT 5443 Query 16673 CG 16674 || Sbjct 5442 CG 5441 >seq366 Length=162438 Score = 116 bits (128), Expect = 6e-22 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| | || || || ||||||||||| || ||||| || || ||| Sbjct 123808 GCGAAACGTCATCGCAAAGTACTCCGTGACAACATCCAAGGCATTACCAAACCGGCCATC 123867 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| |||||||||||||| || || || | || || || | || ||||| | Sbjct 123868 AGGCGTCTTGCTCGTCGTGGTGGCGTAAAACGAATTTCCGGTTTAATTTACGAAGAAACC 123927 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| | || || ||| |||||| | || ||| || |||||| || Sbjct 123928 AGAGGAGTTCTAAAGGTATTTCTTGAGAACGTTATTCGCGACGCTGTCACCTATACGGAA 123987 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || ||||| | ||||| |||| || || | ||||| ||||| Sbjct 123988 CATGCAAAGAGAAAAACCGTCACTGCTATGGACGTCGTTTACGCCCTTAAACGGCAAGGG 124047 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || |||||| | ||| Sbjct 124048 CGCACTCTCTACGGCTTTGGAGGCTAA 124074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068729449361